clustifyrdatahub

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see clustifyrdatahub.

External data sets for clustifyr in ExperimentHub


Bioconductor version: 3.15

References made from external single-cell mRNA sequencing data sets, stored as average gene expression matrices. For use with clustifyr to assign cell type identities.

Author: Rui Fu [aut, cre] , Kent Riemondy [aut] , RNA Bioscience Initiative [fnd], Austin Gillen [ctb] , Jay Hesselberth [ctb] , Sidhant Puntambekar [ctb]

Maintainer: Rui Fu <raysinensis at gmail.com>

Citation (from within R, enter citation("clustifyrdatahub")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("clustifyrdatahub")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("clustifyrdatahub")
clustifyrdatahub HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, MicroarrayData, PackageTypeData, RNASeqData, SequencingData, SingleCellData
Version 1.6.0
License MIT + file LICENSE
Depends R (>= 4.0), ExperimentHub
Imports utils
System Requirements
URL https://rnabioco.github.io/clustifyrdatahub
Bug Reports https://github.com/rnabioco/clustifyrdatahub/issues
See More
Suggests clustifyr, Seurat, usethis, rmarkdown, knitr, tidyr, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package clustifyrdatahub_1.6.0.tar.gz
Windows Binary
macOS Binary (x86_64)
Source Repository git clone https://git.bioconductor.org/packages/clustifyrdatahub
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/clustifyrdatahub
Package Short Url https://bioconductor.org/packages/clustifyrdatahub/
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