Changes in version 0.99.6 - Improved test coverage and depth - Coerced paired_ora output to DataFrame from data.table - Added value field to data man pages Changes in version 0.99.5 - Remove non-exported man pages Changes in version 0.99.4 - Remove filter_gene_sets option, as it is inherent in fgsea::ora - Added test depth and coverage for paired_diff and paired_ora - Fixed wrong storing location for splicing intermediate results Changes in version 0.99.3 - Rewrote code base to remove tidyverse dependencies - Added \code{...} and \link{...} where appropriate in documentation - Added input parameter checks - Reduced redundant input parameters from aggregate_pvalue - Modularized paired_ora and plot_ora - Added filter_gene_sets parameter to help users reduce gene set bias - Increased test coverage and depth - Moved data scripts to inst/script Changes in version 0.99.2 - Implement limma as alternative analysis method - Increased test coverage significantly - Removed usage of deprecated purrr::when Changes in version 0.99.1 - Updated vignette with a brief paragraph on the motivation of pairedGSEA. - Updated NAMESPACE to include all imported packages. Suggested packages are added in notes. Changes in version 0.99.0 - Submitted to Bioconductor