MSstatsResponse
This is the development version of MSstatsResponse; to use it, please install the devel version of Bioconductor.
Statistical Methods for Chemoproteomics Dose-Response Analysis
Bioconductor version: Development (3.22)
Tools for detecting drug-protein interactions and estimating IC50 values from chemoproteomics data. Implements semi-parametric isotonic regression, bootstrapping, and curve fitting to evaluate compound effects on protein abundance.
Author: Sarah Szvetecz [aut, cre], Devon Kohler [aut], Olga Vitek [aut]
Maintainer: Sarah Szvetecz <szvetecz.s at northeastern.edu>
citation("MSstatsResponse")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("MSstatsResponse")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MSstatsResponse")| MSstatsResponse User Guide | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | MassSpectrometry, Proteomics, Regression, Software, StatisticalMethod |
| Version | 0.99.2 |
| In Bioconductor since | BioC 3.22 (R-4.5) |
| License | Artistic-2.0 |
| Depends | R (>= 4.5.0) |
| Imports | BiocParallel, ggplot2, dplyr, stats, parallel, data.table |
| System Requirements | |
| URL | https://github.com/Vitek-Lab/MSstatsResponse |
| Bug Reports | https://github.com/Vitek-Lab/MSstatsResponse/issues |
See More
| Suggests | MSstats, MSstatsTMT, tidyverse, boot, purrr, gridExtra, knitr, rmarkdown, BiocStyle, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MSstatsResponse_0.99.2.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | MSstatsResponse_0.99.2.tgz |
| macOS Binary (arm64) | MSstatsResponse_0.99.2.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MSstatsResponse |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MSstatsResponse |
| Bioc Package Browser | https://code.bioconductor.org/browse/MSstatsResponse/ |
| Package Short Url | https://bioconductor.org/packages/MSstatsResponse/ |
| Package Downloads Report | Download Stats |