RTNduals
This is the development version of RTNduals; for the stable release version, see RTNduals.
Analysis of co-regulation and inference of 'dual regulons'
Bioconductor version: Development (3.23)
RTNduals identifies co-regulatory loops between pairs of regulons inferred by the RTN package by evaluating their shared target genes. It infers dual regulons and tests whether regulator pairs exhibit cooperative or competitive influences on common targets.
Author: Vinicius S. Chagas, Clarice S. Groeneveld, Gordon Robertson, Kerstin B. Meyer, Mauro A. A. Castro
Maintainer: Mauro Castro <mauro.a.castro at gmail.com>, Clarice Groeneveld <clari.groeneveld at gmail.com>
citation("RTNduals")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("RTNduals")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RTNduals")| RTNduals: analysis of co-regulation and inference of dual regulons. | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GeneExpression, GeneRegulation, GraphAndNetwork, NetworkEnrichment, NetworkInference, Software |
| Version | 1.35.1 |
| In Bioconductor since | BioC 3.5 (R-3.4) (9 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.4.0), RTN(>= 2.32), methods |
| Imports | graphics, grDevices, stats, utils |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics |
| Linking To | |
| Enhances | |
| Depends On Me | RTNsurvival |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | RTNduals_1.35.1.tar.gz |
| Windows Binary (x86_64) | RTNduals_1.35.0.zip |
| macOS Binary (big-sur-x86_64) | RTNduals_1.35.0.tgz |
| macOS Binary (big-sur-arm64) | RTNduals_1.35.0.tgz |
| macOS Binary (sonoma-arm64) | RTNduals_1.35.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/RTNduals |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RTNduals |
| Bioc Package Browser | https://code.bioconductor.org/browse/RTNduals/ |
| Package Short Url | https://bioconductor.org/packages/RTNduals/ |
| Package Downloads Report | Download Stats |