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sfi

This is the development version of sfi; to use it, please install the devel version of Bioconductor.

Data analysis for Single File Injections (SFIs) mode LC-MS analysis


Bioconductor version: Development (3.23)

Data analysis for Single File Injections(SFIs) mode LC-MS analysis. In SFIs mode, pooled samples are initially injected to serve as reference peaks for subsequent analyses. Repeated injections of individual samples are then performed at fixed time intervals using isocratic elution. This package provides the functions to analyze data from SFIs mode including peak picking and peak reassignment.

Author: Miao YU [aut, cre] ORCID iD ORCID: 0000-0002-2804-6014

Maintainer: Miao YU <yufreecas at gmail.com>

Citation (from within R, enter citation("sfi")):

Installation

To install this package, start R (version "4.6") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("sfi")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sfi")
sfi workflow HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews FeatureExtraction, MassSpectrometry, Metabolomics, Software
Version 0.99.5
In Bioconductor since BioC 3.23 (R-4.6)
License MIT + file LICENSE
Depends R (>= 4.5.0)
Imports Rcpp, enviGCMS, stats, mzR, rmarkdown, methods, SummarizedExperiment, S4Vectors
System Requirements
URL https://github.com/yufree/sfi
Bug Reports https://github.com/yufree/sfi/issues/new
See More
Suggests knitr, data.table, BiocStyle, ggplot2, MsCoreUtils, testthat (>= 3.0.0)
Linking To Rcpp
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package sfi_0.99.5.tar.gz
Windows Binary (x86_64) sfi_0.99.5.zip
macOS Binary (big-sur-x86_64) sfi_0.99.5.tgz
macOS Binary (big-sur-arm64)
macOS Binary (sonoma-arm64) sfi_0.99.5.tgz
Source Repository git clone https://git.bioconductor.org/packages/sfi
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/sfi
Bioc Package Browser https://code.bioconductor.org/browse/sfi/
Package Short Url https://bioconductor.org/packages/sfi/
Package Downloads Report Download Stats