ALDEx2m-package	ALDEx2m-package
aldex	aldex
aldex.clr	aldex.clr.function
aldex.clr,data.frame-method	aldex.clr.function
aldex.clr,matrix-method	aldex.clr.function
aldex.clr,RangedSummarizedExperiment-method	aldex.clr.function
aldex.clr-class	aldex.clr-class
aldex.clr.function	aldex.clr.function
aldex.corr	aldex.corr
aldex.effect	aldex.effect
aldex.expectedDistance	aldex.expectedDistance
aldex.glm	aldex.glm
aldex.glm.effect	aldex.glm.effect
aldex.glm.plot	aldex.glm.plot
aldex.kw	aldex.kw
aldex.makeScaleMatrix	aldex.makeScaleMatrix
aldex.plot	aldex.plot
aldex.plotFeature	aldex.plotFeature
aldex.senAnalysis	aldex.senAnalysis
aldex.set.mode	aldex.set.mode
aldex.ttest	aldex.ttest
ALDEx2m	ALDEx2m-package
getConditions	getConditions-method
getConditions,aldex.clr-method	getConditions-method
getDenom	getDenom-method
getDenom,aldex.clr-method	getDenom-method
getDirichletInstances	getDirichletInstances-method
getDirichletInstances,aldex.clr-method	getDirichletInstances-method
getDirichletReplicate	getDirichletReplicate-method
getDirichletReplicate,aldex.clr,numeric-method	getDirichletReplicate-method
getDirichletSample	getDirichletSample-method
getDirichletSample,aldex.clr,numeric-method	getDirichletSample-method
getFeatureNames	getFeatureNames-method
getFeatureNames,aldex.clr-method	getFeatureNames-method
getFeatures	getFeatures-method
getFeatures,aldex.clr-method	getFeatures-method
getMonteCarloInstances	getMonteCarloInstances-method
getMonteCarloInstances,aldex.clr-method	getMonteCarloInstances-method
getMonteCarloReplicate	getMonteCarloReplicate-method
getMonteCarloReplicate,aldex.clr,numeric-method	getMonteCarloReplicate-method
getMonteCarloSample	getMonteCarloSample-method
getMonteCarloSample,aldex.clr,numeric-method	getMonteCarloSample-method
getReads	getReads-method
getReads,aldex.clr-method	getReads-method
getSampleIDs	getSampleIDs-method
getSampleIDs,aldex.clr-method	getSampleIDs-method
getScaleSamples	getScaleSamples-method
getScaleSamples,aldex.clr-method	getScaleSamples-method
interpretGamma	interpretGamma
numConditions	numConditions-method
numConditions,aldex.clr-method	numConditions-method
numFeatures	numFeatures-method
numFeatures,aldex.clr-method	numFeatures-method
numMCInstances	numMCInstances-method
numMCInstances,aldex.clr-method	numMCInstances-method
plotGamma	plotGamma
selex	selex
synth2	synth2
