CpGannotated-class      An object summarising individual CpG sites
                        fitted to a given model
DMR.plot                Plotting DMRs
DMRcate-package         DMR calling from bisulfite sequencing and
                        Illumina array data
DMResults-class         Initial storage object for called DMRs - class
changeFDR               Change the individual CpG FDR thresholding for
                        a CpGannotated object.
cpg.annotate            Annotate Illumina CpGs with their chromosome
                        position and test statistic
dmrcate                 DMR identification
extractRanges           Create a GRanges object from 'dmrcate' output.
getCollapsedBetas       Extract a beta matrix from a CpGannotated
                        object.
rmSNPandCH              Filter probes
sequencing.annotate     Annotate a bisulfite sequencing experiment
                        (WGBS or RRBS) with probe weights and
                        chromosomal position.
