MOSClip-package	MOSClip
addResamplingCounts	evaluateResampling
annotePathwayToFather	annotePathwayToFather
availableOmicMethods	availableOmicMethods
checkOrder	resampling
compPCs	compPCs
computeFreqs	computeFreqs
computeOmicsIntersections	computeOmicsIntersections
computePCs	computePCs
convertPathway	convertPathway
coxrsummary	survivalcoxr
createCoxObj	createCoxObj
createDataModule	createDataModule
createMOMView	createMOMView
downloadPathwayRelationFromReactome	downloadPathwayRelationFromReactome
estimateExprCov	estimateExprCov
extractCliquesFromDag	graph-processing
extractSummaryFromBinary	extractSummaryFromBinary
extractSummaryFromCluster	extractSummaryFromCluster
extractSummaryFromNumberOfEvents	extractSummaryFromNumberOfEvents
extractSummaryFromPCA	extractSummaryFromPCA
filterExpr	resampling
filterMultiOmicsForSamples	resampling
getPathFathers	getPathFathers
getPathwaysModulesSuccess	evaluateResampling
glmTest	glmTest
guessInvolvement	guessInvolvement
guessInvolvementPathway	guessInvolvementPathway
id2name	id2name
makeOmics	makeOmics
makePositiveDefinite	makePositiveDefinite
mapPathwaysIDfromGraphite	mapPathwaysIDfromGraphite
mergeCol	resampling
minOrNA	minOrNA
mmmoralize	graph-processing
MOSClip	MOSClip
multiOmics	multiOmics
MultiOmicsModules-class	MultiOmicsModules-class
MultiOmicsPathway-class	MultiOmicsPathway-class
multiOmicsSurvivalModuleTest	multiOmicsSurvivalModuleTest
multiOmicsSurvivalPathwayTest	multiOmicsSurvivalPathwayTest
multiOmicsTopo	multiOmicsTopo
multiOmicsTwoClassModuleTest	multiOmicsTwoClassModuleTest
multiOmicsTwoClassPathwayTest	multiOmicsTwoClassPathwayTest
multiPathwayModuleReport	multiPathwayModuleReport
multiPathwayReport	multiPathwayReport
Omics	Omics-class
Omics-class	Omics-class
ovarianDataset	ovarianDataset
plotFrequencies	plotFrequencies
plotModuleHeat	plotModuleHeat
plotModuleInGraph	plotModuleInGraph
plotModuleKM	plotModuleKM
plotModuleReport	plotModuleReport
plotMultiPathwayReport	plotMultiPathwayReport
plotPathwayHeat	plotPathwayHeat
plotPathwayKM	plotPathwayKM
preparePerms	resampling
pvalueSummary	pvalueSummary
reactSmall	reactSmall
removeSelfLoops	removeSelfLoops
resamplingModulesSurvival	resampling-Survival
resamplingModulesTwoClass	resampling-TwoClass
resamplingPathwaySurvival	resampling-Survival
resamplingPathwayTwoClass	resampling-TwoClass
resolveAndOrder	resampling
runSupertest	runSupertest
selectStablePathwaysModules	evaluateResampling
showModule	showModule
showModule,MultiOmicsModules-method	MultiOmicsModules-class
showMOSpalette	showMOSpalette
showOmics	showOmics
showOmics,Omics-method	Omics-class
showPathway	showPathway
showPathway,MultiOmicsPathway-method	MultiOmicsPathway-class
sparseCompPCs	sparseCompPCs
stripModulesFromPathways	stripModulesFromPathways
summarizeInCluster	summarizeInCluster
summarizeOmicsResByMinPvalue	summarizeOmicsResByMinPvalue
summarizeToBinaryDirectionalEvents	summarizeToBinaryDirectionalEvents
summarizeToBinaryEvents	summarizeToBinaryEvents
summarizeToNumberOfDirectionalEvents	summarizeToNumberOfDirectionalEvents
summarizeToNumberOfEvents	summarizeToNumberOfEvents
summarizeWithPca	summarizeWithPca
survivalcox	survivalcox
survivalcoxr	survivalcoxr
topoCompPCs	topoCompPCs
