121e853f27a1d3446db3874f589ac97e *CITATION
7489446f81491308ef0cc857c4207d94 *DESCRIPTION
073e6106bd1e2adba9fa394f78942428 *INDEX
c1fdbac8592c4487bd84d65a5775897c *LICENSE
244e8213d0931bb6615c0fbba0205262 *Meta/Rd.rds
7dce9b374789eed4d026618901a419bf *Meta/data.rds
97f39cfa069205fc947ab1e51ea53d4e *Meta/features.rds
13c427e1809ee482897a1cd0d3f7d2be *Meta/hsearch.rds
887e459b0582b9b56b9a2d7e353b3ce1 *Meta/links.rds
e544344c587093c5c399d5c98a2b5cfe *Meta/nsInfo.rds
2cd349f5191a727d3302ea0e164969cc *Meta/package.rds
cac2c7fea578cd74e886d9170bee59a9 *Meta/vignette.rds
0635c35c3518b5c0bc60020e20899008 *NAMESPACE
26ee810f0f34cca16a1c74e075f9f9e9 *NEWS.Rd
b0384f62cbe2049336297bd2ad5bb31a *PhyloProfile/R/analyzeDistribution.R
f4d8b8f8e48606dce6e9c58b7f420b09 *PhyloProfile/R/clusterProfile.R
f25008aa8376b965cc91c2f8635a05a9 *PhyloProfile/R/createArchitecturePlot.R
25870c2206fd96585020a0028da06e91 *PhyloProfile/R/createDetailedPlot.R
24fd25e7e2bd70206ce428d740b12507 *PhyloProfile/R/createProfilePlot.R
29b0480745aa202ac8ffac3554803055 *PhyloProfile/R/downloadFilteredCustomized.R
80cd2e512d6cd559f66014962fc3a68a *PhyloProfile/R/downloadFilteredMain.R
ca62f95eeb2248c9efc9487a12e8ea06 *PhyloProfile/R/downloadPlotSettings.R
9a01d985071aeb4cd37eb8425de963d5 *PhyloProfile/R/estimateGeneAge.R
7cf1b6a9ceef0d13a7f9a4b3e4d70e5f *PhyloProfile/R/exportNcbiTax.R
2d96091b0ae6804ae16aad6c0518d3f1 *PhyloProfile/R/functions.R
a0ab8857d674a023659078be6a17885a *PhyloProfile/R/getFastaDemo.R
605875030b6339ff12ed390c93808285 *PhyloProfile/R/groupComparison.R
7b270b1ddd9ca5b70b907952750eac8f *PhyloProfile/R/identifyCoreGene.R
eb88dddd6b04e4e7c46f3cb48f3e754a *PhyloProfile/R/importNcbiTax.R
3f563e67b71b69df1ea039837d78aed1 *PhyloProfile/R/resetTaxData.R
5028bf8e2aeff7579ccb32cb2fb4c4e0 *PhyloProfile/R/selectTaxonRank.R
3e95fdd081e649e9d52db61032fd307e *PhyloProfile/R/updateNcbiTax.R
e0abac16bf1d7882c6a5d41d412382bf *PhyloProfile/data/newTaxa.txt
d805a64b3eef6d2a74bd19774bdacbbc *PhyloProfile/data/preCalcTree.nw
87a1f6ebbf0d4d46e5874dacf48e69ee *PhyloProfile/global.R
84bb00514f2dbbf4ccf8aa3b80c3e476 *PhyloProfile/help.html
feb67466e8681aa04546b3625fe1d01e *PhyloProfile/scripts/convert_oma_standalone_orthoxml.py
6a3bf3727cebd214dd994761a8cd9b7c *PhyloProfile/scripts/hmmscanParser.py
a5d5942e6197364d4ec8d428e2864782 *PhyloProfile/scripts/pfamscanParser.py
adb3093d89cd3e8a53745ba06748a063 *PhyloProfile/server.R
4da23936be0a718492b98b9cef656beb *PhyloProfile/ui.R
89423e66110afd01f2ecaf394e45079e *PhyloProfile/www/custom.css
d6c68f1fe41ced6e98a766a3757313da *R/PhyloProfile
c47ba8c53e165b1d5a94ac09e91505d9 *R/PhyloProfile.rdb
88b5c08a1399bde4c1d4b6ef0af857b4 *R/PhyloProfile.rdx
f61a4281e8b9c3f9d45fe6ee18277889 *data/filteredProfile.RData
7fef64a61eececa680cd330bb6dfa02c *data/finalProcessedProfile.RData
d681311a6a005e78e40eb275e36bedd2 *data/fullProcessedProfile.RData
93c5a623626e0de579970845431dd581 *data/idList.RData
8ef0518200f83063a70a65040534f9e6 *data/mainLongRaw.RData
03088047de7301ce8aca2c8810e00003 *data/ppTaxonomyMatrix.RData
67e303ab30a6c69ca92f893ac5f74116 *data/ppTree.RData
dc3189380fe289981da99d5fae5ca677 *data/profileWithTaxonomy.RData
dc6628031fd27d826738546f326afa8a *data/rankList.RData
1f86903aadd4df37d7362b64bd02401b *data/taxonNamesReduced.RData
7fb39f6f882f3020e9f9d31d3cde3954 *data/taxonomyMatrix.RData
2ccd69dbe60b12a901fd68068ac56411 *doc/PhyloProfile-vignette.R
25b8b0540b259f7bd2c90f69e34e60b9 *doc/PhyloProfile-vignette.Rmd
b6be6614eefc5c4699a2af0c8ab903ec *doc/PhyloProfile-vignette.html
78af93c15dcc49cc28dd4e6ac0548ec4 *doc/index.html
835a14f1441d95df0085685940b1f9d2 *extdata/cat.txt
dfc51a7340725f6eab6a410384307ac3 *extdata/data/idList.txt
e33266e592147dfc2aa59d9bff54b5f3 *extdata/data/preProcessedTaxonomy.txt
12f5bdff0ac42dcaac1b9f60e49ef0fa *extdata/data/rankList.txt
8f8cc667a434c41cc5b9e0d5b73f108b *extdata/domainFiles/101621at6656.domains
de986c78fab49a9ba050afd02bae2604 *extdata/fastaFiles/RAT@10116@1.fa
700e36ef3199fee549329aa9104f0acc *extdata/fastaFiles/concatenatedFile.fa
354341e68bde3b481b3d11648ce302e3 *extdata/test.main.fasta
3a6949d28c6161da60acfd71795a3c2f *extdata/test.main.long
5f683c5e9b2e9c2ac65b9227c3316de4 *extdata/test.main.wide
1f1ed6fdbf8a18d59de7d1232843255b *extdata/test.main.xml
af651faebb606e5b4c7276cab0a94207 *help/AnIndex
cc5bb67841f5249cb869e7954c147999 *help/PhyloProfile.rdb
79788a029ddf36268f21e6abbbbada93 *help/PhyloProfile.rdx
c4dfcfb2efc32bcffc3477f69fd27d37 *help/aliases.rds
80ae1182f1b42a6210db818c3c46184a *help/paths.rds
770eea947d9acce262eb2d1452fdae73 *html/00Index.html
8b9362669af13540a86a3ac6cf22f99d *html/R.css
