d207e3e77f73390142f674c9e70ffe31 *CITATION
2cb1318e2d39c479d8c74173150d4aa2 *DESCRIPTION
1540e28db7778b614ac16a802be99927 *INDEX
5dd54b0437efea4f90db3075bcb09d78 *Meta/Rd.rds
dae1782859c1ec960884872a34797330 *Meta/data.rds
97f39cfa069205fc947ab1e51ea53d4e *Meta/features.rds
79e869f08a716e40e8f978c9d5244bf8 *Meta/hsearch.rds
7ad13878a5e32ebc1aec027259447d03 *Meta/links.rds
fef13af1bc3550116b10b7589bcee52f *Meta/nsInfo.rds
2403cfdd33d154b1dfd7eba1e823cdd4 *Meta/package.rds
fb3be4e614627a667d9711e2409d108c *Meta/vignette.rds
2162005b4f6522bcf286c9dd7ebae58b *NAMESPACE
ebfc9a1c7268ecf660224169254fb3d6 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/PureCN
0165b17e78480dd4d53d67252fb81dc7 *R/PureCN.rdb
cb61ed166e67d394f30f8efe1eb111b2 *R/PureCN.rdx
dac568957f53b15644938f4ea7e99523 *data/centromeres.rda
3b43e27c728d8531b64372cc8960bbf1 *data/purecn.DNAcopy.bdry.rda
32ecf6d03fd075804cea0efcbd740fa0 *data/purecn.example.output.rda
fc42ee19a569d140478ae88622120407 *doc/PureCN.R
7ad13217888d9a76274ca0c8cee08d53 *doc/PureCN.Rnw
7b375cf9edfcb76562afc3400324f34b *doc/PureCN.pdf
624fafbb853fce77e60c3c3e50e60f7e *doc/Quick.R
949d67cdf194e6180111754f83489bad *doc/Quick.Rmd
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1e65c615f2dfcdf47aa1a40f2a9ced26 *extdata/BenchmarkTumorOnly.R
3b26065dca2c4e312ce0386bf8b5deb7 *extdata/Coverage.R
794a7b43eb5214e9c7be3fa871a438cb *extdata/Dx.R
8be57726a9481841fa171372ed9b8235 *extdata/FilterCallableLoci.R
cdd6b2989602e5227ef993f876d8c49f *extdata/IntervalFile.R
8898dfc5ec0afbd51ae5c4f9919f7f5f *extdata/NormalDB.R
b49ae79b3ff07ae584d5253ec2d210ad *extdata/PureCN.R
8212796045d23163776d02c9996f14a9 *extdata/buggy_cnvkit.seg.gz
dc147e94ae2855d472787c9ce77eb530 *extdata/dist/calculateSbdry.R
3e55f3cbacf0ade2c2a406f1ad3f51b7 *extdata/dist/downloadCentromeres.R
7df758adaaf5b6d487ac22e4dba6c31e *extdata/ex1.bam
1888862b9d22ddb8ca663eabc41c78f0 *extdata/ex1.bam.bai
7ff3a77a583973ad739082fc7d327298 *extdata/ex1_gcgene.txt
3cde10782966a832047779d3d1294e46 *extdata/ex1_intervals.txt
692adc2219b6286156d029bc88f2ebdf *extdata/ex1_intervals_headered.txt
3600e3733184b2cf5822b61d26114658 *extdata/ex2_intervals.bed
ff600751c668406cf7c32e7362ce3899 *extdata/ex2_intervals.txt
3182e4f35fef60cd6a0d9fdec742c79b *extdata/ex2_mappability.bed
66070567be0feb761cebd6051e37999e *extdata/ex2_mappability.bigWig
fbe2d2fffd0dc64303686f11b5817883 *extdata/ex2_reference.fa
35fcb62fd46b593d1269e249174c30ff *extdata/ex2_reference.fa.fai
132903c9cf51362b793d719a82500098 *extdata/ex2_reptiming.bed
9b97a8416ce0918d993be657b41ef8b9 *extdata/ex3_intervals.bed
bad94524668ccd54248551b63caf6d41 *extdata/ex3_mappability.bed
559ee8cb44c6df4fe00696181ef07c60 *extdata/ex3_reference.fa
b9affa44c1486b4a1dfe8552bc60b25c *extdata/ex3_reference.fa.fai
91255bff447f0142ca69354d2f7b58ab *extdata/example.vcf.gz
39953f0dff955aa857e1e33eb4260bae *extdata/example_allelic_counts.tsv
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3b1ed770f9de08a67d73e260b6bc97af *extdata/example_cosmic.vcf.gz
cb4501c1bb40ad0b7af797f7a756d74e *extdata/example_cosmic.vcf.gz.tbi
1c28b0038d8c843f938f3a77f9f34faf *extdata/example_gatk4_denoised_cr.tsv.gz
5de34022e616b42afeda6dacae8f3321 *extdata/example_gatk4_modelfinal.seg.gz
7cf6ebfc8d897064bdcd935830ef708d *extdata/example_intervals.txt
889cd6d608956276074287eef52e78d3 *extdata/example_intervals_tiny.txt
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91e6bf7827f9f6de08942bcd9456a321 *extdata/example_mutect2.vcf.gz
f5c82a061425aff64204e05b5720a226 *extdata/example_mutect2.vcf.gz.tbi
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19754260b86d2459c35a3ce0db62fecf *extdata/example_normal.txt.gz
47dd683dc984b8fb750be503892d0488 *extdata/example_normal2.txt.gz
15d982eb620d8f5cdf671c75d96b745d *extdata/example_normal3.cnn
9f8f7691886d943ef1e0e70ca00cabf0 *extdata/example_normal4.cnr
2a18a775c4d52d67095e83ffd9943f39 *extdata/example_normal5.hdf5
d6d1be0ba48db34f020b0ac78e0ee96b *extdata/example_normal_tiny.txt
bb5da3767dabbd7a51ae717fddfef7d4 *extdata/example_seg.txt
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5bbd05573a604c237f387a59dccc6c3b *extdata/example_single.vcf.gz.tbi
c521b9c3edea6e878b701ef21c902ba8 *extdata/example_tumor.txt.gz
347456cd221abbd889d34786e4a5c225 *extdata/example_tumor2.txt.gz
77d4c608f251f9ce95bfec040912cd2c *extdata/example_tumor_tiny.txt
cfcfe0c54614686bd514ecafe41925c2 *extdata/example_vcf.vcf.gz
516302874424e3b8b8eaf5e45171da38 *extdata/example_vcf.vcf.gz.tbi
8ac01e4b1acc4ef4c4223b0c65a4018f *extdata/gatk4_m2_test_pon_db.tgz
512d62f2bb7bfca79b48d3164ce0bbd0 *extdata/gatk4_pon_db.tgz
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4bd9f12430d82fde8901748a0f650f34 *extdata/issue184.vcf.gz
1cbb5b9acc86679e30374c097eb5198f *extdata/issue184_2.vcf.gz
b489620e134fed0a8016ad6474dafacd *extdata/issue184_2_mb.rds
8874f7bce1a87d827417fc0abf8f08b6 *extdata/issue192_tumor.cnr
3a49c7e98f57a1d8c39f6bb97cc7977e *extdata/issue192_tumor.seg
65c0d0db29e9eb08431353421592bdfe *extdata/issue62.vcf.gz
5a9102d13b20c08bb5d40c1cfd905f9a *extdata/issue62.vcf.gz.tbi
edf609a37d88244a6c43b8d7a4e86c27 *extdata/normalpanel.vcf.gz
d9676085e3af0a6e9847bf329e96e1be *extdata/normalpanel.vcf.gz.tbi
efc17f1901c0090230be09f42bd24366 *extdata/test_coverage_overlapping_intervals.txt
bceaf797717920f0683939b3daec9b6d *help/AnIndex
406f595ed9278c54e4453d69b16d6a20 *help/PureCN.rdb
7350ac99572065495e14d37e71ffa179 *help/PureCN.rdx
aad404897942961ea624e02e2345f86e *help/aliases.rds
9d991961d56ee01e524fc30685a8d720 *help/paths.rds
82eb31a08dedb16a545df2218aee535a *html/00Index.html
8b9362669af13540a86a3ac6cf22f99d *html/R.css
