AttractorModuleSet-class
                        Class AttractorModuleSet
SynExpressionSet-class
                        Class SynExpressionSet
attract-package         Methods to find the Gene Expression Modules
                        that Represent the Drivers of Kauffman's
                        Attractor Landscape
buildCustomIncidenceMatrix
                        This function builds an incidence matrix for
                        custom gene sets.
calcFuncSynexprs        Functional enrichmental analysis for a set of
                        synexpression groups.
calcInform              Function calculates the informativeness metric
                        (average MSS) for a set of cluster assignments.
calcModfstat            Function calculates a modified F-statistic for
                        a set of cluster assignments.
calcRss                 Function calculates the average RSS for a set
                        of cluster assignments.
exprs.dat               Gene Expression Matrix of Published Data
filterDataSet           This function filters our lowly expressed genes
                        in RNAseq data.
findAttractors          Infers the set of cell-lineage specific gene
                        expression modules using GSEAlm and KEGG.
findCorrPartners        Determines Genes with Highly Correlated
                        Expression Profiles to a Synexpression Group
findSynexprs            This function finds the synexpression groups
                        present within a core attractor pathway module.
loring.eset             An ExpressionSet Object containing published
                        data from M?ller et al.
plotsynexprs            Visualizing the Average Expression Profile of a
                        Synexpression Group.
removeFlatGenes         Flags a set of genes which demonstrates little
                        variation across the celltypes or experimental
                        groups of interest.
samp.info               samp.info Contains the Sample Information for
                        the Mueller data set.
subset.loring.eset      An ExpressionSet Object containing published
                        data from M?ller et al.
