CAT                     CAT
DA_ALDEx2               DA_ALDEx2
DA_ANCOM                DA_ANCOM
DA_DESeq2               DA_DESeq2
DA_MAST                 DA_MAST
DA_Maaslin2             DA_Maaslin2
DA_NOISeq               DA_NOISeq
DA_Seurat               DA_Seurat
DA_ZicoSeq              DA_ZicoSeq
DA_basic                DA_basic
DA_corncob              DA_corncob
DA_dearseq              DA_dearseq
DA_edgeR                DA_edgeR
DA_limma                DA_limma
DA_linda                DA_linda
DA_maaslin3             DA_maaslin3
DA_metagenomeSeq        DA_metagenomeSeq
DA_mixMC                DA_mixMC
RMSE                    RMSE
addKnowledge            addKnowledge
areaCAT                 areaCAT
checkNormalization      checkNormalization
createColors            createColors
createConcordance       createConcordance
createEnrichment        createEnrichment
createMocks             createMocks
createPositives         createPositives
createSplits            createSplits
createTIEC              createTIEC
enrichmentTest          enrichmentTest
extractDA               extractDA
extractStatistics       extractStatistics
fitDM                   fitDM
fitHURDLE               fitHURDLE
fitModels               fitModels
fitNB                   fitNB
fitZIG                  fitZIG
fitZINB                 fitZINB
getDA                   getDA
getPositives            getPositives
getStatistics           getStatistics
get_counts_metadata     get_counts_metadata
iterative_ordering      iterativeOrdering
meanDifferences         meanDifferences
microbial_metabolism    (Data) Microbial metabolism
norm_CSS                norm_CSS
norm_DESeq2             norm_DESeq2
norm_TSS                norm_TSS
norm_edgeR              norm_edgeR
plotConcordance         plotConcordance
plotContingency         plotContingency
plotEnrichment          plotEnrichment
plotFDR                 plotFDR
plotFPR                 plotFPR
plotKS                  plotKS
plotLogP                plotLogP
plotMD                  plotMD
plotMutualFindings      plotMutualFindings
plotPositives           plotPositives
plotQQ                  plotQQ
plotRMSE                plotRMSE
prepareObserved         prepareObserved
ps_plaque_16S           (Data) 60 Gingival Plaque samples of 16S rRNA
                        (HMP 2012)
ps_stool_16S            (Data) 33 Stool samples of 16S rRNA (HMP 2012)
runDA                   runDA
runMocks                runMocks
runNormalizations       runNormalizations
runSplits               runSplits
setNormalizations       setNormalizations
set_ALDEx2              set_ALDEx2
set_ANCOM               set_ANCOM
set_DESeq2              set_DESeq2
set_MAST                set_MAST
set_Maaslin2            set_Maaslin2
set_NOISeq              set_NOISeq
set_Seurat              set_Seurat
set_ZicoSeq             set_ZicoSeq
set_basic               set_basic
set_corncob             set_corncob
set_dearseq             set_dearseq
set_edgeR               set_edgeR
set_limma               set_limma
set_linda               set_linda
set_maaslin3            set_maaslin3
set_metagenomeSeq       set_metagenomeSeq
set_mixMC               set_mixMC
weights_ZINB            weights_ZINB
