Package: marr
Type: Package
Title: Maximum rank reproducibility
Version: 1.20.0
Date: 2021-05-10
Authors@R: 
    c(person("Tusharkanti", "Ghosh",
           email = "tusharkantighosh30@gmail.com",
           role = c("aut", "cre")),
    person("Max", "McGrath",
           role = c("aut")),
    person("Daisy", "Philtron",
           role = c("aut")),
    person("Katerina", "Kechris",
           role = c("aut")),
    person("Debashis", "Ghosh",
           role = c("aut", "cph")))
Imports: Rcpp, SummarizedExperiment, utils, methods, ggplot2, dplyr,
        magrittr, rlang, S4Vectors
LinkingTo: Rcpp
Depends: R (>= 4.0)
Suggests: knitr, rmarkdown, BiocStyle, testthat, covr
VignetteBuilder: knitr
Encoding: UTF-8
License: GPL (>= 3)
Description: marr (Maximum Rank Reproducibility) is a nonparametric
        approach that detects reproducible signals using a maximal rank
        statistic for high-dimensional biological data. In this R
        package, we implement functions that measures the
        reproducibility of features per sample pair and sample pairs
        per feature in high-dimensional biological replicate
        experiments. The user-friendly plot functions in this package
        also plot histograms of the reproducibility of features per
        sample pair and sample pairs per feature. Furthermore, our
        approach also allows the users to select optimal filtering
        threshold values for the identification of reproducible
        features and sample pairs based on output visualization checks
        (histograms). This package also provides the subset of data
        filtered by reproducible features and/or sample pairs.
biocViews: QualityControl, Metabolomics, MassSpectrometry, RNASeq,
        ChIPSeq
BugReports: https://github.com/Ghoshlab/marr/issues
RoxygenNote: 7.1.1
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:04:28 UTC
RemoteUrl: https://github.com/bioc/marr
RemoteRef: RELEASE_3_22
RemoteSha: c204de730e7dcf92707d536c83fd330d90e51f8b
NeedsCompilation: yes
Packaged: 2025-11-11 15:40:22 UTC; root
Author: Tusharkanti Ghosh [aut, cre],
  Max McGrath [aut],
  Daisy Philtron [aut],
  Katerina Kechris [aut],
  Debashis Ghosh [aut, cph]
Maintainer: Tusharkanti Ghosh <tusharkantighosh30@gmail.com>
Built: R 4.5.2; x86_64-w64-mingw32; 2025-11-11 15:44:48 UTC; windows
Archs: x64
