AP.RNAseq6l3c3t         CoGAPS patterns and genes weights for
                        p.RNAseq6l3c3t
CR.RNAseq6l3c3t         CogapsResult object for p.RNAseq6l3c3t
alluvialMat             alluvialMat
aucMat                  aucMat
bonferroniCorrectedDifferences
                        bonferroniCorrectedDifferences
cluster2pattern         Generic cluster2pattern function
cluster2pattern-class   cluster2pattern
clusterPlotR            Generic clusterPlotR function
correlateR              correlateR
correlateR-class        correlateR
cr_microglial           CogapsResult object for microglial_counts
geneMatchR              Generic geneMatchR function
getTSNE                 getTSNE
getUMAP                 getUMAP
glial_counts            log-normalized count data from astrocytes and
                        oligodendrocytes in the p6 mouse cortex.
initialize,cluster2pattern-method
                        Constructor for cluster2pattern
initialize,correlateR-method
                        Constructor for correlateR
initialize,rotatoR-method
                        Constructor for rotatoR
intersectoR             Generic intersectoR function
map.ESepiGen4c1l        RNAseqing and ChIPSeq of matched genes in
                        differentiated human iPS cells
map.RNAseq6l3c3t        RNAseqing from human 3 iPS & 3 ES cell lines in
                        3 experimental condition at 3 time points
microglial_counts       log-normalized count data from microglial cells
                        in the p6 mouse cortex.
multivariateAnalysisR   Generic multivariateAnalysisR function
multivariateAnalysisR_seurat_test
                        Truncated Seurat Object with latent space
                        projection done to unspecified cells in
                        different stages for multivariateAnalysisR
                        analysis
p.ESepiGen4c1l          RNAseqing and ChIPSeq of matched genes in
                        differentiated human iPS cells
p.RNAseq6l3c3t          RNAseqing from human 3 iPS & 3 ES cell lines in
                        3 experimental condition at 3 time points
pd.ESepiGen4c1l         RNAseqing and ChIPSeq of matched genes in
                        differentiated human iPS cells
pd.RNAseq6l3c3t         RNAseqing from human 3 iPS & 3 ES cell lines in
                        3 experimental condition at 3 time points
pdVolcano               pdVolcano
plotConfidenceIntervals
                        plotConfidenceIntervals
plotVolcano             plotVolcano
projectR                Generic projectR function
projectionDriveR        projectionDriveR
retinal_patterns        CoGAPS patterns learned from the developing
                        mouse retina.
rotatoR                 rotatoR
rotatoR-class           rotatoR
