curate_clusters         Curate clusters from seqArchR result
form_combined_panel     Form a combined panel of three plots
generate_all_plots      Generate all plots for a given sample
generate_html_report    Generate HTML report with scrollable combined
                        panel plots
handle_tc_from_cage     Handle writing of tag clusters (TCs) from CAGE
                        experiment to disk as BED files.
iqw_tpm_plots           IQW, TPM plots
order_clusters_iqw      Order clusters by median or mean interquantile
                        widths
per_cluster_annotations
                        per_cluster_annotations
per_cluster_go_term_enrichments
                        Perform per cluster GO term enrichment analysis
per_cluster_seqlogos    Plot per cluster sequence logos
per_cluster_strand_dist
                        Visualize as barplots how promoters in each
                        cluster are distributed on different
                        chromosomes and strands
plot_motif_heatmaps     Plot heatmaps of motifs occurring in seqArchR
                        clusters
plot_motif_heatmaps2    Plot heatmaps of motifs occurring in seqArchR
                        clusters
seqArchRplus            seqArchRplus: A package for downstream analyses
                        of promoter sequence architectures/clusters
                        identified by seqArchR
seqs_acgt_image         Visualize all sequences as an image
write_seqArchR_cluster_track_bed
                        Write seqArchR cluster information in BED files
                        viewable as browser tracks
