common_neighbors        Shared neighbors of connected vertices
count_genes             Number of total genes in an ontology database
filter_annot_with_network
                        Filter ontology datasets using PPI network
                        object
functional_annot        Functional similarity score based on ontology
graph_from_op           Igraph object from OmniPath network
in_omnipath             Check which genes of interest are or not in
                        OmniPath
prioritization_genes    Candidate genes prioritization
process_annot           Processing of ontology annotations
random_walk             Random Walk with Restart (RWR)
score_candidate_genes_from_PPI
                        The full WPPI workflow
subgraph_op             Extract PPI subgraph by genes of interest
weighted_adj            Weighted adjacency matrix
wppi                    The wppi package
wppi_data               Database knowledge for wppi
wppi_go_data            Retrieves data from Gene Ontology (GO)
wppi_hpo_data           Retrieves data from Human Phenotype Ontology
                        (HPO)
wppi_omnipath_data      Protein-protein interaction data from OmniPath
