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URL: https://git.bioconductor.org/packages/StatescopeR

Last Changed Rev: / Revision:

Last Changed Date:

Hostname	OS /Arch	BUILD	CHECK	BUILD BIN	POST-PROCESSING
nebbiolo2	Linux (Ubuntu 24.04.1 LTS)/x86_64	ERROR	skipped	skipped	skipped

nebbiolo2 Summary

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Package: StatescopeR

Version: 0.99.1

RVersion: 4.5

BiocVersion: 3.22

BuildCommand: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data StatescopeR

BuildTime: 1 minutes 8.79 seconds

CheckCommand:

CheckTime:

BuildBinCommand:

BuildBinTime:

PackageFileSize: -1.00 KiB

BuildID:: StatescopeR_20250718114404

PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: StatescopeR. Starting Build package.

PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1.

nebbiolo2 BUILD SRC output

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===============================

 R CMD BUILD

===============================

* checking for file StatescopeR/DESCRIPTION ... OK
* preparing StatescopeR:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building StatescopeR.Rmd using rmarkdown

Quitting from StatescopeR.Rmd:118-136 [Prepare StatescopeR input]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `lock()`:
! Directory of lock file does not exist: '/var/cache/basilisk'
---
Backtrace:
    
 1. StatescopeR::select_genes(scRNAseq, 200L)
 2.   basilisk::basiliskStart(autogenes, testload = c("autogenes"))
 3.     basilisk::obtainEnvironmentPath(env)
 4.       basilisk::lockExternalDir(exdir, exclusive = FALSE)
 5.         dir.expiry::lockDirectory(path, ...)
 6.           filelock::lock(plock, exclusive = FALSE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'StatescopeR.Rmd' failed with diagnostics:
Directory of lock file does not exist: '/var/cache/basilisk'
--- failed re-building StatescopeR.Rmd

SUMMARY: processing the following file failed:
  StatescopeR.Rmd

Error: Vignette re-building failed.
Execution halted

nebbiolo2 CHECK output

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nebbiolo2 BUILD BIN output

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