KO_group                KEGG Orthology (KO) Group Classification
PGC_group               Photosynthesis Gene Classification Groups
blastp_df               BLASTP Results for test Proteins
eggnog_df               EggNOG Functional Annotation Results
gc_add                  Complete Gene Clusters by Adding Missing ORFs
gc_cal                  Identify and Extract Gene Clusters from Scaled
                        BLAST Data
gc_cluster              Identify Breakpoints of Gene Clusters within a
                        Contig
gc_plot                 Plot Scaled Gene Clusters with Arrows
gc_position             Extract ORF Positions for One Specific Gene
                        Cluster
gc_range                Determine ORF Range for a Candidate Gene
                        Cluster
gc_scale                Scale Gene-Cluster Coordinates for
                        Visualization
gclink                  Gene-Cluster Discovery, Annotation and
                        Visualization
length_filter           Remove Length Outliers from BLAST Results
orf_extract             Extract ORF and Genome Information from BLAST
                        or BLASTP Results
orf_locate              Parse ORF Coordinates from Prodigal FASTA
                        Headers
photosynthesis_gene_list
                        Photosynthesis Gene List
seq_data                Genomic Sequence Data with Annotations
