Last updated on 2025-12-07 09:50:09 CET.
| Package | ERROR | WARN | NOTE | OK |
|---|---|---|---|---|
| EFDR | 1 | 12 | ||
| FRK | 3 | 6 | 4 | |
| IDE | 1 | 12 | ||
| sparseinv | 13 |
Current CRAN status: WARN: 1, OK: 12
Version: 1.3
Check: package dependencies
Result: WARN
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'
VignetteBuilder package required for checking but not installed: ‘knitr’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.3
Check: package vignettes
Result: NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: ERROR: 3, NOTE: 6, OK: 4
Version: 2.3.1
Check: for unstated dependencies in ‘demo’
Result: NOTE
'library' or 'require' call not declared from: ‘gridExtra’
Flavors: r-devel-linux-x86_64-debian-clang, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 2.3.1
Check: package dependencies
Result: ERROR
Package required but not available: ‘Hmisc’
Packages suggested but not available for checking:
'covr', 'dggrids', 'knitr'
VignetteBuilder package required for checking but not installed: ‘knitr’
Files named as vignettes but with no recognized vignette engine:
‘inst/doc/FRK_intro.Rnw’
‘inst/doc/FRK_non-Gaussian.Rnw’
(Is a VignetteBuilder field missing?)
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.3.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [90m/59m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> ops <- options("crayon.enabled" = FALSE)
> library(testthat)
> require("covr")
Loading required package: covr
>
> test_check("FRK")
Loading required package: FRK
Attaching package: 'FRK'
The following object is masked from 'package:stats':
simulate
NOTE: In FRK >2.0 simple_kriging_fixed = FALSE by default, and hence
universal kriging is done by default. However this is only the case when
method = 'TMB'. When method = 'EM', simple kriging is done, irrespective of
what the argument simple_kriging_fixed is set to.
|
| | 0%OMP: Warning #96: Cannot form a team with 24 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
|
|======================= | 33%
|
|=============================================== | 67%
|
|======================================================================| 100%
Maximum EM iterations reached
Intercept
0.152395
Formula: z ~ 1
Assumed response distribution: gaussian
Specified link function: identity
Method of model fitting: EM
Number of datasets: 1
Number of basis functions: 18
Class of basis functions: Basis
Number of BAUs [extract using object@BAUs]: 138
Number of observations [extract using object@Z]: 50
Mean obs. variance at BAU level [extract using object@Ve]: 0.01
Fine-scale variance proportionality constant [extract using object@sigma2fshat]: 0.1172823
Dimensions of C in Z = C*Y + e [extract using object@Cmat]: c(50L, 138L)
Dimensions of S in Y = X*alpha + S*eta + delta [extract using object@S]: c(50L, 18L)
Number of covariates: 1
Formula: z ~ 1
Assumed response distribution: gaussian
Specified link function: identity
Method of model fitting: EM
Number of datasets: 1
Number of basis functions: 18
Class of basis functions: Basis
Number of BAUs [extract using object@BAUs]: 138
Number of observations [extract using object@Z]: 50
Mean obs. variance at BAU level [extract using object@Ve]: 0.01
Fine-scale variance proportionality constant [extract using object@sigma2fshat]: 0.1172823
Dimensions of C in Z = C*Y + e [extract using object@Cmat]: c(50L, 138L)
Dimensions of S in Y = X*alpha + S*eta + delta [extract using object@S]: c(50L, 18L)
Number of covariates: 1
NOTE: In FRK >2.0 simple_kriging_fixed = FALSE by default, and hence
universal kriging is done by default. However this is only the case when
method = 'TMB'. When method = 'EM', simple kriging is done, irrespective of
what the argument simple_kriging_fixed is set to.
|
| | 0%
|
|======================= | 33%
|
|=============================================== | 67%
|
|======================================================================| 100%
Maximum EM iterations reached
Averaging over polygons...
NOTE: In FRK >2.0 simple_kriging_fixed = FALSE by default, and hence
universal kriging is done by default. However this is only the case when
method = 'TMB'. When method = 'EM', simple kriging is done, irrespective of
what the argument simple_kriging_fixed is set to.
|
| | 0%
|
|======================= | 33%
|
|=============================================== | 67%
|
|======================================================================| 100%
Maximum EM iterations reached
Averaging over polygons...
NOTE: In FRK >2.0 simple_kriging_fixed = FALSE by default, and hence
universal kriging is done by default. However this is only the case when
method = 'TMB'. When method = 'EM', simple kriging is done, irrespective of
what the argument simple_kriging_fixed is set to.
|
| | 0%
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 2.3.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
Warning: elapsed-time limit of 1 hours reached for sub-process
--- re-building ‘FRK_intro.Rnw’ using knitr
OMP: Warning #96: Cannot form a team with 24 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
--- re-building ‘FRK_non-Gaussian.Rnw’ using knitr
--- finished re-building ‘FRK_non-Gaussian.Rnw’
SUMMARY: processing the following file failed:
‘FRK_intro.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 2.3.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [0m/90m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> ops <- options("crayon.enabled" = FALSE)
> library(testthat)
> require("covr")
Loading required package: covr
>
> test_check("FRK")
Loading required package: FRK
Attaching package: 'FRK'
The following object is masked from 'package:stats':
simulate
NOTE: In FRK >2.0 simple_kriging_fixed = FALSE by default, and hence
universal kriging is done by default. However this is only the case when
method = 'TMB'. When method = 'EM', simple kriging is done, irrespective of
what the argument simple_kriging_fixed is set to.
|
| | 0%
|
|======================= | 33%
|
|=============================================== | 67%
|
|======================================================================| 100%
Maximum EM iterations reached
Intercept
0.152395
Formula: z ~ 1
Assumed response distribution: gaussian
Specified link function: identity
Method of model fitting: EM
Number of datasets: 1
Number of basis functions: 18
Class of basis functions: Basis
Number of BAUs [extract using object@BAUs]: 138
Number of observations [extract using object@Z]: 50
Mean obs. variance at BAU level [extract using object@Ve]: 0.01
Fine-scale variance proportionality constant [extract using object@sigma2fshat]: 0.1172823
Dimensions of C in Z = C*Y + e [extract using object@Cmat]: c(50L, 138L)
Dimensions of S in Y = X*alpha + S*eta + delta [extract using object@S]: c(50L, 18L)
Number of covariates: 1
Formula: z ~ 1
Assumed response distribution: gaussian
Specified link function: identity
Method of model fitting: EM
Number of datasets: 1
Number of basis functions: 18
Class of basis functions: Basis
Number of BAUs [extract using object@BAUs]: 138
Number of observations [extract using object@Z]: 50
Mean obs. variance at BAU level [extract using object@Ve]: 0.01
Fine-scale variance proportionality constant [extract using object@sigma2fshat]: 0.1172823
Dimensions of C in Z = C*Y + e [extract using object@Cmat]: c(50L, 138L)
Dimensions of S in Y = X*alpha + S*eta + delta [extract using object@S]: c(50L, 18L)
Number of covariates: 1
NOTE: In FRK >2.0 simple_kriging_fixed = FALSE by default, and hence
universal kriging is done by default. However this is only the case when
method = 'TMB'. When method = 'EM', simple kriging is done, irrespective of
what the argument simple_kriging_fixed is set to.
|
| | 0%
|
|======================= | 33%
|
|=============================================== | 67%
|
|======================================================================| 100%
Maximum EM iterations reached
Averaging over polygons...
NOTE: In FRK >2.0 simple_kriging_fixed = FALSE by default, and hence
universal kriging is done by default. However this is only the case when
method = 'TMB'. When method = 'EM', simple kriging is done, irrespective of
what the argument simple_kriging_fixed is set to.
|
| | 0%
|
|======================= | 33%
|
|=============================================== | 67%
|
|======================================================================| 100%
Maximum EM iterations reached
Averaging over polygons...
NOTE: In FRK >2.0 simple_kriging_fixed = FALSE by default, and hence
universal kriging is done by default. However this is only the case when
method = 'TMB'. When method = 'EM', simple kriging is done, irrespective of
what the argument simple_kriging_fixed is set to.
|
| | 0%
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 2.3.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
Warning: elapsed-time limit of 1 hours reached for sub-process
--- re-building ‘FRK_intro.Rnw’ using knitr
--- re-building ‘FRK_non-Gaussian.Rnw’ using knitr
--- finished re-building ‘FRK_non-Gaussian.Rnw’
SUMMARY: processing the following file failed:
‘FRK_intro.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 2.3.1
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘dggrids’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 2.3.1
Check: installed package size
Result: NOTE
installed size is 105.4Mb
sub-directories of 1Mb or more:
data 5.0Mb
doc 1.8Mb
libs 97.5Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 2.3.1
Flags: --no-vignettes
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: 'dggrids'
Flavor: r-oldrel-windows-x86_64
Version: 2.3.1
Flags: --no-vignettes
Check: installed package size
Result: NOTE
installed size is 20.6Mb
sub-directories of 1Mb or more:
data 4.8Mb
doc 1.8Mb
libs 12.8Mb
Flavor: r-oldrel-windows-x86_64
Current CRAN status: ERROR: 1, OK: 12
Version: 0.3.1
Check: package dependencies
Result: ERROR
Package required but not available: ‘FRK’
Package suggested but not available for checking: ‘knitr’
VignetteBuilder package required for checking but not installed: ‘knitr’
Files named as vignettes but with no recognized vignette engine:
‘inst/doc/IDE_intro.Rnw’
(Is a VignetteBuilder field missing?)
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: NOTE: 13
Version: 0.1.3
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Andrew Zammit-Mangion <andrewzm@gmail.com>’
Found the following \keyword or \concept entries
which likely give several index terms:
File ‘Takahashi_Davis.Rd’:
\keyword{factor,}
File ‘cholsolve.Rd’:
\keyword{factor,}
File ‘cholsolveAQinvAT.Rd’:
\keyword{factor,}
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.1.3
Check: Rd files
Result: NOTE
checkRd: (-1) cholsolveAQinvAT.Rd:5: Lost braces; missing escapes or markup?
5 | \title{Solve the equation X = AQ^{-1}t(A) under permutations}
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.1.3
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64