Last updated on 2026-05-14 16:52:04 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.6.2 | 19.58 | 286.49 | 306.07 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.6.2 | 16.28 | 164.41 | 180.69 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.6.2 | 35.00 | 438.75 | 473.75 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.6.2 | 34.00 | 432.96 | 466.96 | OK | |
| r-devel-windows-x86_64 | 0.6.2 | 25.00 | 255.00 | 280.00 | OK | |
| r-patched-linux-x86_64 | 0.6.2 | 22.04 | 266.10 | 288.14 | OK | |
| r-release-linux-x86_64 | 0.6.2 | 19.52 | 267.18 | 286.70 | OK | |
| r-release-macos-arm64 | 0.6.2 | 7.00 | 104.00 | 111.00 | OK | |
| r-release-macos-x86_64 | 0.6.2 | 18.00 | 353.00 | 371.00 | OK | |
| r-release-windows-x86_64 | 0.6.2 | 23.00 | 255.00 | 278.00 | OK | |
| r-oldrel-macos-arm64 | 0.6.2 | OK | ||||
| r-oldrel-macos-x86_64 | 0.6.2 | 18.00 | 304.00 | 322.00 | OK | |
| r-oldrel-windows-x86_64 | 0.6.2 | 30.00 | 350.00 | 380.00 | OK |
Version: 0.6.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [86s/100s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(omock)
>
> test_check("omock")
! Input tables only contain the observation_period table, hence only the person table will be updated
! Input tables only contain the observation_period table, hence only the person table will be updated
i Attempting download with timeout = 120 seconds.
i Reading GiBleed tables.
i Creating '/tmp/RtmpFcIGqr/DATASETS'.
i Attempting download with timeout = 120 seconds.
i Deleting prior version of GiBleed.
i Attempting download with timeout = 120 seconds.
i Attempting download with timeout = 120 seconds.
i Loading bundled GiBleed tables from package data.
i Adding drug_strength table.
i Creating local <cdm_reference> object.
i Loading bundled GiBleed tables from package data.
i Adding drug_strength table.
i Creating local <cdm_reference> object.
i Loading bundled GiBleed tables from package data.
i Adding drug_strength table.
i Creating local <cdm_reference> object.
i Inserting <cdm_reference> into duckdb.
Saving _problems/test-mockDatasets-37.R
i Loading bundled GiBleed tables from package data.
i Adding drug_strength table.
i Creating local <cdm_reference> object.
i Inserting <cdm_reference> into duckdb.
Saving _problems/test-mockDatasets-39.R
i Attempting download with timeout = 120 seconds.
i Reading GiBleed tables.
Joining with `by = join_by(visit_occurrence_id)`
i Reading GiBleed tables.
i Reading GiBleed tables.
[ FAIL 2 | WARN 8 | SKIP 1 | PASS 154 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test-changeCdmVersion.R:2:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-mockDatasets.R:37:3'): mock datasets cdm creation ────────────
Expected `cdm <- mockCdmFromDataset(datasetName = dbName, source = "duckdb")` not to throw any errors.
Actually got a <rlib_error_package_not_found> with message:
The package "duckdb" is required.
── Failure ('test-mockDatasets.R:39:3'): mock datasets cdm creation ────────────
Expected `cdm <- mockCdmFromDataset(datasetName = dbName, source = "duckdb")` not to throw any errors.
Actually got a <rlib_error_package_not_found> with message:
The package "duckdb" is required.
[ FAIL 2 | WARN 8 | SKIP 1 | PASS 154 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.6.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘mock_from_tables.Rmd’ using rmarkdown
--- finished re-building ‘mock_from_tables.Rmd’
--- re-building ‘synthetic_clinical_tables.Rmd’ using rmarkdown
--- finished re-building ‘synthetic_clinical_tables.Rmd’
--- re-building ‘synthetic_cohorts.Rmd’ using rmarkdown
--- finished re-building ‘synthetic_cohorts.Rmd’
--- re-building ‘synthetic_datasets.Rmd’ using rmarkdown
Quitting from synthetic_datasets.Rmd:127-130 [unnamed-chunk-11]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlib_error_package_not_found>
Error in `mockCdmFromDataset()`:
! The package "duckdb" is required.
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'synthetic_datasets.Rmd' failed with diagnostics:
The package "duckdb" is required.
--- failed re-building ‘synthetic_datasets.Rmd’
--- re-building ‘synthetic_vocabulary.Rmd’ using rmarkdown
--- finished re-building ‘synthetic_vocabulary.Rmd’
SUMMARY: processing the following file failed:
‘synthetic_datasets.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc