BOLDconnectR: Retrieve, Transform and Analyze the Barcode of Life Data Systems
Data
Facilitates retrieval, transformation and analysis of the data
from the Barcode of Life Data Systems (BOLD) database <https://boldsystems.org/>.
This package allows both public and private user data to be easily downloaded into the R
environment using a variety of inputs such as: IDs (processid, sampleid), BINs, dataset codes,
project codes, taxonomy, geography etc. It provides frictionless data conversion
into formats compatible with other R-packages and third-party tools,
as well as functions for sequence alignment & clustering, biodiversity analysis and spatial mapping.
| Version: |
1.0.0 |
| Depends: |
R (≥ 4.0.0) |
| Imports: |
ape (≥ 5.5), BAT (≥ 2.0), data.table (≥ 1.13), dplyr (≥
1.0.1), ggplot2 (≥ 3.3.2), httr (≥ 1.4.2), jsonlite (≥ 1.7), maps (≥ 3.3), methods, reshape2, rnaturalearth, sf (≥ 0.9.4), skimr (≥ 2.1.2), tidyr (≥ 1.1.1), utils, vegan (≥ 2.5.7) |
| Suggests: |
Biostrings, BiocManager, msa, muscle |
| Published: |
2025-09-17 |
| DOI: |
10.32614/CRAN.package.BOLDconnectR |
| Author: |
Sameer Padhye [aut, cre],
Liliana Ballesteros-Mejia [aut],
Sujeevan Ratnasingham [aut] |
| Maintainer: |
Sameer Padhye <spadhye at uoguelph.ca> |
| License: |
MIT + file LICENSE |
| NeedsCompilation: |
no |
| Materials: |
README |
| CRAN checks: |
BOLDconnectR results |
Documentation:
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