- Abbott, Sam, Joel Hellewell, Robin N. Thompson, Katharine
Sherratt, Hamish P. Gibbs, Nikos I. Bosse, James D. Munday, et al. 2020.
“Estimating the Time-Varying Reproduction Number of SARS-CoV-2 Using
National and Subnational Case Counts.” Wellcome Open Research 5
(December): 112. http://dx.doi.org/10.12688/wellcomeopenres.16006.2 
- Sherratt, Katharine, Sam Abbott, Sophie R. Meakin, Joel
Hellewell, James D. Munday, Nikos Bosse, Null Null, Mark Jit, and
Sebastian Funk. 2021. “Exploring Surveillance Data Biases When
Estimating the Reproduction Number: With Insights into Subpopulation
Transmission of COVID-19 in England.” Philosophical Transactions of the
Royal Society of London. Series B, Biological Sciences 376 (1829):
20200283. http://dx.doi.org/10.1098/rstb.2020.0283 
- Bosse, Nikos I., Sam Abbott, Johannes Bracher, Habakuk Hain,
Billy J. Quilty, Mark Jit, Centre for the Mathematical Modelling of
Infectious Diseases COVID-19 Working Group, Edwin van Leeuwen, Anne
Cori, and Sebastian Funk. 2022. “Comparing Human and Model-Based
Forecasts of COVID-19 in Germany and Poland.” PLoS Computational Biology
18 (9): e1010405. http://dx.doi.org/10.1371/journal.pcbi.1010405 
- Davies, Nicholas G., Sam Abbott, Rosanna C. Barnard, Christopher
I. Jarvis, Adam J. Kucharski, James D. Munday, Carl A. B. Pearson, et
al. 2021. “Estimated Transmissibility and Impact of SARS-CoV-2 Lineage
B.1.1.7 in England.” Science 372 (6538). https://doi.org/10.1126/science.abg3055. 
- Meakin, Sophie, Sam Abbott, Nikos Bosse, James Munday, Hugo
Gruson, Joel Hellewell, Katharine Sherratt, CMMID COVID-19 Working
Group, and Sebastian Funk. 2022. “Comparative Assessment of Methods for
Short-Term Forecasts of COVID-19 Hospital Admissions in England at the
Local Level.” BMC Medicine 20 (1): 86. http://dx.doi.org/10.1186/s12916-022-02271-x