GOxploreR: Structural Exploration of the Gene Ontology (GO) Knowledge Base
It provides an effective, efficient, and fast way to explore the Gene Ontology (GO).
Given a set of genes, the package contains functions to assess the GO and obtain the
terms associated with the genes and the levels of the GO terms. The package provides
functions for the three different GO ontology. We discussed the methods explicitly in
the following article <doi:10.1038/s41598-020-73326-3>.
| Version: |
1.2.8 |
| Depends: |
R (≥ 2.10), GO.db, gontr, ggraph |
| Imports: |
igraph, network, dplyr, biomaRt, annotate, graphics, ggplot2 |
| Suggests: |
knitr, rmarkdown |
| Published: |
2025-04-05 |
| DOI: |
10.32614/CRAN.package.GOxploreR |
| Author: |
Kalifa Manjang [aut, cre],
Frank Emmert-Streib [aut],
Shailesh Tripathi [aut],
Olli Yli-Harja [aut],
Matthias Dehmer [aut] |
| Maintainer: |
Kalifa Manjang <kalifamanjang1 at gmail.com> |
| License: |
GPL-2 |
| NeedsCompilation: |
no |
| In views: |
Omics |
| CRAN checks: |
GOxploreR results |
Documentation:
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