LDlinkR: Calculating Linkage Disequilibrium (LD) in Human Population Groups of Interest

Provides access to the 'LDlink' API (<https://ldlink.nih.gov/?tab=apiaccess>) using the R console. This programmatic access facilitates researchers who are interested in performing batch queries in 1000 Genomes Project (2015) <doi:10.1038/nature15393> data using 'LDlink'. 'LDlink' is an interactive and powerful suite of web-based tools for querying germline variants in human population groups of interest. For more details, please see Machiela et al. (2015) <doi:10.1093/bioinformatics/btv402>.

Version: 1.4.0
Imports: httr (≥ 1.4.0), utils (≥ 3.4.2)
Suggests: testthat, knitr, rmarkdown, spelling
Published: 2024-04-10
DOI: 10.32614/CRAN.package.LDlinkR
Author: Timothy A. Myers ORCID iD [aut, cre], Stephen J. Chanock [aut], Mitchell J. Machiela ORCID iD [aut]
Maintainer: Timothy A. Myers <myersta at mail.nih.gov>
BugReports: https://github.com/CBIIT/LDlinkR/issues
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: https://ldlink.nih.gov
NeedsCompilation: no
Language: en-US
Citation: LDlinkR citation info
Materials: README, NEWS
CRAN checks: LDlinkR results

Documentation:

Reference manual: LDlinkR.html , LDlinkR.pdf
Vignettes: *LDlinkR*: An R Package for Rapidly Calculating Linkage Disequilibrium Statistics in Diverse Populations (source, R code)

Downloads:

Package source: LDlinkR_1.4.0.tar.gz
Windows binaries: r-devel: LDlinkR_1.4.0.zip, r-release: LDlinkR_1.4.0.zip, r-oldrel: LDlinkR_1.4.0.zip
macOS binaries: r-release (arm64): LDlinkR_1.4.0.tgz, r-oldrel (arm64): LDlinkR_1.4.0.tgz, r-release (x86_64): LDlinkR_1.4.0.tgz, r-oldrel (x86_64): LDlinkR_1.4.0.tgz
Old sources: LDlinkR archive

Reverse dependencies:

Reverse imports: locuszoomr
Reverse suggests: GRaNIE

Linking:

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