Inference of a multi-states birth-death model from a phylogeny, comprising a number of states N, birth and death rates for each state and on which edges each state appears. Inference is done using a hybrid approach: states are progressively added in a greedy approach. For a fixed number of states N the best model is selected via maximum likelihood. Reference: J. Barido-Sottani, T. G. Vaughan and T. Stadler (2018) <doi:10.1098/rsif.2018.0512>.
| Version: | 1.2.1 |
| Imports: | ape (≥ 5.1), foreach |
| Suggests: | knitr, rmarkdown, doParallel |
| Published: | 2021-04-16 |
| DOI: | 10.32614/CRAN.package.ML.MSBD |
| Author: | Joelle Barido-Sottani [aut, cre] |
| Maintainer: | Joelle Barido-Sottani <joelle.barido-sottani at m4x.org> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| Materials: | NEWS |
| CRAN checks: | ML.MSBD results |
| Reference manual: | ML.MSBD.html , ML.MSBD.pdf |
| Vignettes: |
Using ML.MSBD (source, R code) |
| Package source: | ML.MSBD_1.2.1.tar.gz |
| Windows binaries: | r-devel: ML.MSBD_1.2.1.zip, r-release: ML.MSBD_1.2.1.zip, r-oldrel: ML.MSBD_1.2.1.zip |
| macOS binaries: | r-release (arm64): ML.MSBD_1.2.1.tgz, r-oldrel (arm64): ML.MSBD_1.2.1.tgz, r-release (x86_64): ML.MSBD_1.2.1.tgz, r-oldrel (x86_64): ML.MSBD_1.2.1.tgz |
| Old sources: | ML.MSBD archive |
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