PCMBaseCpp: Fast Likelihood Calculation for Phylogenetic Comparative Models

Provides a C++ backend for multivariate phylogenetic comparative models implemented in the R-package 'PCMBase'. Can be used in combination with 'PCMBase' to enable fast and parallel likelihood calculation. Implements the pruning likelihood calculation algorithm described in Mitov et al. (2020) <doi:10.1016/j.tpb.2019.11.005>. Uses the 'SPLITT' C++ library for parallel tree traversal described in Mitov and Stadler (2018) <doi:10.1111/2041-210X.13136>.

Version:	0.1.11
Depends:	R (≥ 3.1.0), Rcpp, methods
Imports:	PCMBase, data.table, abind
LinkingTo:	Rcpp, RcppArmadillo
Suggests:	testthat, knitr, rmarkdown, covr
Published:	2025-05-04
DOI:	10.32614/CRAN.package.PCMBaseCpp
Author:	Venelin Mitov [aut, cre, cph] (<a href="https://venelin.github.io">venelin.github.io</a>)
Maintainer:	Venelin Mitov <vmitov at gmail.com>
BugReports:	https://github.com/venelin/PCMBaseCpp/issues
License:	GPL (≥ 3.0)
URL:	https://github.com/venelin/PCMBaseCpp, https://venelin.github.io
NeedsCompilation:	yes
Citation:	PCMBaseCpp citation info
Materials:	README, NEWS
CRAN checks:	PCMBaseCpp results

Documentation:

Reference manual:	PCMBaseCpp.html , PCMBaseCpp.pdf
Vignettes:	Getting started (source, R code)

Downloads:

Package source:	PCMBaseCpp_0.1.11.tar.gz
Windows binaries:	r-devel: PCMBaseCpp_0.1.11.zip, r-release: PCMBaseCpp_0.1.11.zip, r-oldrel: PCMBaseCpp_0.1.11.zip
macOS binaries:	r-release (arm64): PCMBaseCpp_0.1.11.tgz, r-oldrel (arm64): PCMBaseCpp_0.1.11.tgz, r-release (x86_64): PCMBaseCpp_0.1.11.tgz, r-oldrel (x86_64): PCMBaseCpp_0.1.11.tgz
Old sources:	PCMBaseCpp archive

Reverse dependencies:

Reverse suggests:

mvSLOUCH

Linking:

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