library(ReporterScore)
#> [38;5;246mIf you use the ReporterScore package in published research, please cite:
#>
#> Chen Peng, Qiong Chen, Shangjin Tan, Xiaotao Shen, Chao Jiang, Generalized reporter score-based enrichment analysis for omics data, Briefings in Bioinformatics, Volume 25, Issue 3, May 2024, bbae116, https://doi.org/10.1093/bib/bbae116 [39mGeneralized Reporter Score-based Enrichment Analysis for Omics Data
To cite ‘ReporterScore’ in publications use:
C. Peng, Q. Chen, S. Tan, X. Shen, C. Jiang, Generalized Reporter Score-based Enrichment Analysis for Omics Data. Briefings in Bioinformatics (2024). https://doi.org/10.1093/bib/bbae116.
Please go to https://github.com/Asa12138/ReporterScore for more details.
If you have any questions/issues, please visit github issue tracker.
Here is the output of sessionInfo() on the system on which this document was compiled:
sessionInfo()
#> R version 4.5.1 (2025-06-13)
#> Platform: aarch64-apple-darwin20
#> Running under: macOS Sonoma 14.7
#>
#> Matrix products: default
#> BLAS: /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/lib/libRblas.0.dylib
#> LAPACK: /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/lib/libRlapack.dylib; LAPACK version 3.12.1
#>
#> locale:
#> [1] C/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
#>
#> time zone: Asia/Shanghai
#> tzcode source: internal
#>
#> attached base packages:
#> [1] stats graphics grDevices utils datasets methods base
#>
#> other attached packages:
#> [1] ReporterScore_0.2.5
#>
#> loaded via a namespace (and not attached):
#> [1] vctrs_0.6.5 cli_3.6.5 knitr_1.50 rlang_1.1.6
#> [5] xfun_0.52 generics_0.1.4 S7_0.2.0 jsonlite_2.0.0
#> [9] glue_1.8.0 pcutils_0.2.9 htmltools_0.5.8.1 sass_0.4.10
#> [13] scales_1.4.0 rmarkdown_2.29 grid_4.5.1 evaluate_1.0.4
#> [17] jquerylib_0.1.4 tibble_3.3.0 fastmap_1.2.0 yaml_2.3.10
#> [21] lifecycle_1.0.4 compiler_4.5.1 dplyr_1.1.4 RColorBrewer_1.1-3
#> [25] pkgconfig_2.0.3 rstudioapi_0.17.1 farver_2.1.2 digest_0.6.37
#> [29] R6_2.6.1 tidyselect_1.2.1 pillar_1.11.0 magrittr_2.0.3
#> [33] bslib_0.9.0 gtable_0.3.6 tools_4.5.1 ggplot2_4.0.1
#> [37] cachem_1.1.0Patil, K. R. & Nielsen, J. Uncovering transcriptional regulation of metabolism by using metabolic network topology. Proc Natl Acad Sci U S A 102, 2685–2689 (2005).
L. Liu, R. Zhu, D. Wu, Misuse of reporter score in microbial enrichment analysis. iMeta. 2, e95 (2023).