Implements adaptive gPCA, as described in: Fukuyama, J. (2017) <doi:10.48550/arXiv.1702.00501>. The package also includes functionality for applying the method to 'phyloseq' objects so that the method can be easily applied to microbiome data and a 'shiny' app for interactive visualization.
| Version: | 0.1.3 |
| Depends: | R (≥ 3.1.0) |
| Imports: | ape (≥ 3.1.4), ggplot2 (≥ 1.0.0), shiny (≥ 1.0.0), phyloseq (≥ 1.14.0) |
| Suggests: | knitr, rmarkdown |
| Published: | 2022-12-08 |
| DOI: | 10.32614/CRAN.package.adaptiveGPCA |
| Author: | Julia Fukuyama [aut, cre] |
| Maintainer: | Julia Fukuyama <julia.fukuyama at gmail.com> |
| License: | AGPL-3 |
| NeedsCompilation: | no |
| CRAN checks: | adaptiveGPCA results |
| Reference manual: | adaptiveGPCA.html , adaptiveGPCA.pdf |
| Vignettes: |
adaptvieGPCA vignette (source, R code) |
| Package source: | adaptiveGPCA_0.1.3.tar.gz |
| Windows binaries: | r-devel: adaptiveGPCA_0.1.3.zip, r-release: adaptiveGPCA_0.1.3.zip, r-oldrel: adaptiveGPCA_0.1.3.zip |
| macOS binaries: | r-release (arm64): adaptiveGPCA_0.1.3.tgz, r-oldrel (arm64): adaptiveGPCA_0.1.3.tgz, r-release (x86_64): adaptiveGPCA_0.1.3.tgz, r-oldrel (x86_64): adaptiveGPCA_0.1.3.tgz |
| Old sources: | adaptiveGPCA archive |
| Reverse suggests: | treeDA |
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