Provides the necessary functions to identify and extract a selection of already available barcode constructs (Cornils, K. et al. (2014) <doi:10.1093/nar/gku081>) and freely choosable barcode designs from next generation sequence (NGS) data. Furthermore, it offers the possibility to account for sequence errors, the calculation of barcode similarities and provides a variety of visualisation tools (Thielecke, L. et al. (2017) <doi:10.1038/srep43249>).
| Version: | 1.2.8 |
| Depends: | R (≥ 3.4) |
| Imports: | methods, RColorBrewer, ape, ggnetwork, ggplot2, ggraph, igraph, network, phangorn, stringdist, visNetwork, reshape2, S4Vectors, shiny, ggtree, dplyr, VennDiagram, futile.logger, future, future.apply, tools, ShortRead, Biostrings |
| Suggests: | BiocManager, testthat, knitr, rmarkdown |
| Published: | 2025-03-10 |
| DOI: | 10.32614/CRAN.package.genBaRcode |
| Author: | Lars Thielecke [aut, cre] |
| Maintainer: | Lars Thielecke <lars.thielecke at tu-dresden.de> |
| License: | LGPL-2 | LGPL-2.1 | LGPL-3 [expanded from: LGPL] |
| NeedsCompilation: | no |
| CRAN checks: | genBaRcode results |
| Reference manual: | genBaRcode.html , genBaRcode.pdf |
| Vignettes: |
Introduction to the genBaRcode GUI (source, R code) Introduction to genBaRcode (source, R code) |
| Package source: | genBaRcode_1.2.8.tar.gz |
| Windows binaries: | r-devel: genBaRcode_1.2.8.zip, r-release: genBaRcode_1.2.8.zip, r-oldrel: genBaRcode_1.2.8.zip |
| macOS binaries: | r-release (arm64): genBaRcode_1.2.8.tgz, r-oldrel (arm64): genBaRcode_1.2.8.tgz, r-release (x86_64): genBaRcode_1.2.8.tgz, r-oldrel (x86_64): genBaRcode_1.2.8.tgz |
| Old sources: | genBaRcode archive |
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