- Renamed exported function best_reconstruction_QPtofind_best_reconstruction_QP.
- Added function optimize_exposure_QP.
- Added best_reconstruction_QP.
- Fixed a bug in function sig_dist_matrixwhen in some
very rare cases, some cosine similarities can be slightly greater than
1.
- Fixed a bug in function plot_exposure_internalnot to
plot sample names when there are no column names
inexposure.
- Removed package PCAWG7from Suggests field in
DESCRIPTION. AddedICAMSas suggested package.
- Added new dependency package setsas it is required in
functionbest_reconstruction_QP.
- Updated test functions in tests/testthat/ folder.
- Fixed test in test_exposure_related_functions.R.
- Added return value for exported functions
match_two_sig_setsandwrite_exposure.
- Added reference for “Hungarian algorithm” in package
DESCRIPTION.
- Updated documentation for function
TP_FP_FN_avg_sim.