Developed to deal with multi-locus genotype data, this package is especially designed for those panel which include different type of markers. Basic genetic parameters like allele frequency, genotype frequency, heterozygosity and Hardy-Weinberg test of mixed genetic data can be obtained. In addition, a new test for mutual independence which is compatible for mixed genetic data is developed in this package.
| Version: | 1.0.0 |
| Depends: | R (≥ 3.6.0) |
| Imports: | stats (≥ 3.3), utils (≥ 3.6.1), data.table |
| Suggests: | testthat, knitr, rmarkdown, ggplot2 |
| Published: | 2021-03-17 |
| DOI: | 10.32614/CRAN.package.mixIndependR |
| Author: | Bing Song |
| Maintainer: | Bing Song <bing.song at utsouthwestern.edu> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | https://github.com/ice4prince/mixIndependR |
| NeedsCompilation: | no |
| Citation: | mixIndependR citation info |
| Materials: | README, NEWS |
| CRAN checks: | mixIndependR results |
| Reference manual: | mixIndependR.html , mixIndependR.pdf |
| Vignettes: |
Basic Genetics (source, R code) Distribution Building and Comparison (source, R code) Hypothesis Test (source, R code) |
| Package source: | mixIndependR_1.0.0.tar.gz |
| Windows binaries: | r-devel: mixIndependR_1.0.0.zip, r-release: mixIndependR_1.0.0.zip, r-oldrel: mixIndependR_1.0.0.zip |
| macOS binaries: | r-release (arm64): mixIndependR_1.0.0.tgz, r-oldrel (arm64): mixIndependR_1.0.0.tgz, r-release (x86_64): mixIndependR_1.0.0.tgz, r-oldrel (x86_64): mixIndependR_1.0.0.tgz |
| Old sources: | mixIndependR archive |
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