In gene sequencing methods, the topological features of protein-protein interaction (PPI) networks are often used, such as ToppNet <https://toppgene.cchmc.org>. In this study, a candidate gene prioritization method was proposed for non-communicable diseases considering disease risks transferred between genes in weighted disease PPI networks with weights for nodes and edges based on functional information.
| Version: | 1.0.1 |
| Depends: | R (≥ 3.6.0) |
| Imports: | AnnotationDbi, org.Hs.eg.db |
| Suggests: | knitr, rmarkdown, testthat |
| Published: | 2020-02-01 |
| DOI: | 10.32614/CRAN.package.prioGene |
| Author: | Erqiang Hu [aut, cre] |
| Maintainer: | Erqiang Hu <13766876214 at 163.com> |
| License: | Artistic-2.0 |
| NeedsCompilation: | no |
| Materials: | README, NEWS |
| In views: | Omics |
| CRAN checks: | prioGene results |
| Reference manual: | prioGene.html , prioGene.pdf |
| Vignettes: |
my-vignete (source, R code) prioGene (source, R code) |
| Package source: | prioGene_1.0.1.tar.gz |
| Windows binaries: | r-devel: prioGene_1.0.1.zip, r-release: prioGene_1.0.1.zip, r-oldrel: prioGene_1.0.1.zip |
| macOS binaries: | r-release (arm64): not available, r-oldrel (arm64): prioGene_1.0.1.tgz, r-release (x86_64): prioGene_1.0.1.tgz, r-oldrel (x86_64): prioGene_1.0.1.tgz |
| Old sources: | prioGene archive |
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