rarestR: Rarefaction-Based Species Richness Estimator
Calculate rarefaction-based alpha- and beta-diversity. Offer parametric extrapolation to estimate the total expected species in a single community and the total expected shared species between two communities. Visualize the curve-fitting for these estimators.
| Version: | 1.1.1 |
| Depends: | R (≥ 3.5.0) |
| Imports: | Rdpack |
| Suggests: | knitr, rmarkdown, testthat (≥ 3.0.0) |
| Published: | 2025-03-30 |
| DOI: | 10.32614/CRAN.package.rarestR |
| Author: | Peng Zhao  [aut,
cre],
Yi Zou [aut] |
| Maintainer: | Peng Zhao <pengzhao20 at outlook.com> |
| BugReports: | https://github.com/pzhaonet/rarestR/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/pzhaonet/rarestR, https://pzhaonet.github.io/rarestr/ |
| NeedsCompilation: | no |
| Citation: | rarestR citation info |
| CRAN checks: | rarestR results |
Documentation:
| Reference manual: | rarestR.html , rarestR.pdf |
| Vignettes: |
rarestR: An R package using rarefaction metrics to estimate α-diversity and β-diversity for incomplete samples (source, R code) |
Downloads:
| Package source: | rarestR_1.1.1.tar.gz |
| Windows binaries: | r-devel: rarestR_1.1.1.zip, r-release: rarestR_1.1.1.zip, r-oldrel: rarestR_1.1.1.zip |
| macOS binaries: | r-release (arm64): rarestR_1.1.1.tgz, r-oldrel (arm64): rarestR_1.1.1.tgz, r-release (x86_64): rarestR_1.1.1.tgz, r-oldrel (x86_64): rarestR_1.1.1.tgz |
| Old sources: | rarestR archive |
Linking:
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