slouch: Stochastic Linear Ornstein-Uhlenbeck Comparative Hypotheses
An implementation of a phylogenetic comparative method. It can fit univariate among-species Ornstein-Uhlenbeck models of phenotypic trait evolution, where the trait evolves towards a primary optimum. The optimum can be modelled as a single parameter, as multiple discrete regimes on the phylogenetic tree, and/or with continuous covariates. See also Hansen (1997) <doi:10.2307/2411186>, Butler & King (2004) <doi:10.1086/426002>, Hansen et al. (2008) <doi:10.1111/j.1558-5646.2008.00412.x>.
| Version: |
2.1.5 |
| Depends: |
R (≥ 3.0.0), base, stats |
| Imports: |
crayon, parallel, ape, memoise |
| Suggests: |
knitr, rmarkdown, bookdown, testthat |
| Published: |
2024-02-15 |
| DOI: |
10.32614/CRAN.package.slouch |
| Author: |
Bjørn Tore Kopperud [aut, cre],
Jason Pienaar [aut],
Kjetil Lysne Voje [aut],
Steven Hecht Orzack [aut],
Thomas F. Hansen [aut],
Mark Grabowski [ctb] |
| Maintainer: |
Bjørn Tore Kopperud <kopperud at protonmail.com> |
| BugReports: |
https://github.com/kopperud/slouch/issues |
| License: |
GPL-2 |
| URL: |
https://github.com/kopperud/slouch |
| NeedsCompilation: |
no |
| Materials: |
NEWS |
| In views: |
Phylogenetics |
| CRAN checks: |
slouch results |
Documentation:
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