mrcImageDeconvolution
Usage
Usage: mrcImageDeconvolution
Options:
[-i[nput] In (NULL ).as(inFile::mrcImage ) ] :Essential :Input: Src
[-k[ernel] Kernel (NULL ).as(inFile::mrcImage ) ] :Essential :Input: Kernel
[-k[ernel]centre KernelCentre (1 ).as(Integer ) ] :Optional :Input: Kernel Centre
[-o[utput] Out (NULL ).as(outFile::mrcImage ) ] :Essential :Output: Dst
[-o[utput]conv OutConv (NULL ).as(outFile::mrcImage ) ] :Optional :Output: Conv*Dst to compare with in
[-O[utput] OutASCII (stdout ).as(outFile::ASCII ) ] :Optional :Output: Param
[-O[utput]RMSD OutRMSD (NULL ).as(outFile::mrcImage ) ] :Optional :Output: Param
[-thresCTF thresCTF (1e-4 ).as(Real ) ] :Optional :threshold CTF for InverseFilter
[-NSRatio NSRatio (0.0 ).as(Real ) ] :Optional :N/S Ratio for R-dependent Wiener Filter
[-NSCoeff NSCoeff (0.0 ).as(Real ) ] :Optional :N/S Coeff for R-dependent Wiener Filter
[-Pad3DMode Pad3DMode (1 ).as(Integer ) ] :Optional :lmrcImage3DPad Mode
[-r[max] r (0 ).as(Real ) ] :Optional :Pad3D: [pix] Threshold radius of signal.Default is min(Nx,Ny).
[-w[idth] w (1 ).as(Real ) ] :Optional :Pad3D: [pix] Width of slope. For mode 1.
[-v[alue] v (0 ).as(Real ) ] :Optional :Pad3D: Value of out of threshold.
[-Floating ] :Optional :Pad3D: Floating
[-maxIter maxIter (0 ).as(Integer ) ] :Optional :maxIteration for Iterative
[-minRMSD minRMSD (0.0 ).as(Real ) ] :Optional :min of MRSD for Iterative
[-lambda lambda (0.5 ).as(Real ) ] :Optional :lambda for Iterative
[-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
[-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
----- Additional Usage -----
Deconvolution Mode
0: No deconvolution
1: CTF/|CTF| (phase flipping)
2: CTF (CTF-Multi)
3: 1/CTF (Inverse Filter)
4: CTF/(SQR(CTF)+SQR(NS)) (Wiener Filter)
5: SQR(CTF) x CTF/|CTF| (phase flipping + ctfWeighted)
6: 1/|CTF| (No phase-flipping: Inverse Filter)
7: |CTF|/(SQR(CTF)+SQR(NS)) (No phase-flipping: Wiener Filter)
8: CTF /(SQR(CTF)+SQR(NS*exp(a*R))) (phase-flipping: Wiener Filter + Noise)
9: |CTF|/(SQR(CTF)+SQR(NS*exp(a*R))) (No phase-flipping: Wiener Filter + Noise)