mrcImageSolventFlattening
Usage
Usage: mrcImageSolventFlattening
Options:
[-i[nput] In (NULL ).as(inFile ) ] :Essential :InputDataFile
[-o[utput] Out (NULL ).as(outFile ) ] :Essential :OutputDataFile
[-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
[-rmax rmax (190 ).as(Real ) ] :Optional :rmax [A]
[-sd Range (0 ).as(Real ) ] :Optional :Assign voxels below MeanOfSolvent+Range*SDofSolvent as Solvent
[-density density (0 ).as(Real ) ] :Optional :embed mean lower than density value
[-Floating ] :Optional :data minus mean of Solvent
[-oparam[eter] OutParam (stdout ).as(outFile ) ] :Optional :Output: Parameters
[-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
----- Additional Usage -----
-m 0: mean of all density
1: mean of sphere surface density at rmax
2: mean of cylinder surface density at rmax
6: mean of 2D Edge X=0 or N.x-1
-SD range : assign the voxels whose density is less than maen + range*SD as solvent range
-density is stronger than -m