mrcImageCTFCompensation
Usage
Usage: mrcImageCTFCompensation
Options:
[-i[nput] In (stdin ).as(inFile ) ] :Essential :InputFile
[-o[utput] Out (stdout ).as(outFile ) ] :Essential :OutputDataFile
[-info[mation] Info (NULL ).as(inFile ) ] :Optional :InformationFile(Essense only)
[-info[mation]2 Info2 (NULL ).as(inFile ) ] :Optional :InformationFile2(Display2 ctfinfo format)
[-kV kV (200 ).as(Real ) ] :Optional :AccVol[kV]
[-Cs Cs (2.1 ).as(Real ) ] :Optional :Cs[mm]
[-df Defocus (27000 ).as(Real ) ] :Optional :Defocus[A]:under(+)
[-white WhiteNoise (0.1 ).as(Real ) ] :Optional :WhiteNoise(N/S)
[-SinWin SinWinRmin (0.1 ).as(Real )
SinWinRmax (1.0 ).as(Real ) ] :Optional :Windowing by sine function from Rmin[/A] to Rmax[/A].Default: No Window.
[-A[mplitude contrast]Amp (0.1 ).as(Real ) ] :Optional :The ratio of amplitude contrast to phase contrast
[-Astig[matism] dfMin (0 ).as(Real )
dfMax (0 ).as(Real )
asAxis (0 ).as(Real ) ] :Optional :With Astigmatism
[-NoAstig[matism] ] :Optional :Without Astigmatism
[-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
[-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
----- mode -----
mode 0: No Correction
mode 1: x ctf/|ctf|, phase flipping
mode 2: x ctf, phase flipping and ctf-multiplying
mode 3: x 1/ctf (0.1<|ctf| phase flipping and ctf-divided
mode 4: x ctf/(SQR(ctf)+SQR(NS)) phase-flipping + Winner Filtering
mode 5: x SQR(ctf) x ctf/|ctf| phase-flipping + ctf-Weighted
mode 6: x 1/|ctf| (0.1<|ctf|) No phase-flipping + ctf-divided
mode 7: x |ctf|/(SQR(ctf)+SQR(NS)) No phase flipping + Winner Filtering
mode 8: x ctf /(SQR(ctf)+SQR(NS*exp(a*R))) phase flipping + Winner Filtering + NS-raising
mode 9: x |ctf|/(SQR(ctf)+SQR(NS*exp(a*R))) No phase flipping + Winner Filtering + NS-raising
----- Note -----
You can enter information from -info
Info file was made by llExtractWithLayerSeparationFilamentInfo -oI
defocus Cs kV AmplitudeContrast
----- Note1 -----
-NoStig is the highest priority and so -Astig and parameters in -info2 are ignored.