mrcImageClusterAnalysis
Usage
Usage: mrcImageClusterAnalysis
Options:
[-I[nput array of file]In (NULL ).as(inFileListNoOpen ) ] :Essential :InputDataFiles
[-o[utput] Out (stdout ).as(outFile ) ] :Optional :OutputDataFile
[-O[utput] ] :Optional :Output: averaged images: filename is xxxx.avg: xxxx is input filename.
[-N[umberOfClusters] N (1 ).as(Integer ) ] :Optional :Number of clusters
[-Min[imumCorrelation]Min (0.0 ).as(Real ) ] :Optional :Minimum: Correlation: Conditions for ending
[-Iter[ation] ] :Optional :IterationFlag
[-A[uto]R[otation] AutoRotation (72 ).as(Integer ) ] :Optional :AutoRotation: rotation divided by this value
[-A[utoRot]Range ARMin (0 ).as(Real )
ARMax (360 ).as(Real ) ] :Optional :AutoRotationRange
[-A[uto]R[otation]iter[ation]AutoRotationIteration(2 ).as(Integer ) ] :Optional :AutoRotationIteration
[-A[uto]R[otation]MethodAutoRotationMethod (0 ).as(Integer ) ] :Optional :Method for Correlation for Auto Rotation
[-M[odeForCorrelation]correlationMode (19 ).as(Integer ) ] :Optional :Correlation Mode for AutoRotation
[-Log Log (stdout ).as(appendFile ) ] :Optional :Log: Output
[-Log2 Log2 (NULL ).as(appendFile ) ] :Optional :Log2: Output: ClusterNode Only
[-LogIn LogIn (NULL ).as(inFile ) ] :Optional :previousLog: Input
[-prevF[ileNum] prevFileNum (0 ).as(Integer ) ] :Optional :previousLogFileNum: Input
[-pthread pthread (0 ).as(Integer ) ] :Optional :pthread: Input
[-pvm ] :Optional :Parallel Analysis by PVM
[-pvmList pvmList (NULL ).as(inFile ) ] :Optional :pvmList: Input
[-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
[-m[ode] mode (2 ).as(Integer ) ] :Optional :Mode
----- Additional Usage -----
Distance between clusters: mode
mode 0: By Correlation
mode 1: By Euclid Distance
mode 2: By Ward Method (default) : Euclid Length (no rotation) or its square (rotation)
mode 3: By Ward Method using Linear Correlation : (1 - Correlation)/(1 + Correlation)
mode 4: By Linear Correlation : (1 - Correlation)/(1 + Correlation)