llExtractCtrlFileCreate

Usage

Usage: llExtractCtrlFileCreate
Options:
    [-i[nput]            In                  (NULL      )] :Optional  :InputDataFile
    [-o[utput]           Out                 (stdout    )] :Optional  :OutputDataFile
    [-c[onfig]           configFile          (NULL      )] :Optional  :ConfigurationFile
    [-t                  turn                (-6        )] :Optional  :Turn
    [-u                  unit                (13        )] :Optional  :Unit
    [-N                  nstrand             (1         )] :Optional  :N-strand
    [-Y1                 Y1                  (36        )] :Optional  :Y1 [pixel]: The Position of LayerLine which l = |t| i.e., |n|=1&&m=0 for the first time
    [-Y0                 Y0                  (78        )] :Optional  :Y0 [pixel]: The Position of LayerLine which n = 0 , l != 0 for the first time
    [-rmax               rmax                (250       )] :Optional  :rmax[A]
    [-Rmax               Rmax                (0.1       )] :Optional  :Rmax[/A]
    [-lx                 lx                  (5.0       )] :Optional  :Pixel Size
    [-ly                 ly                  (5.0       )] :Optional  :Pixel Size
    [-nx                 nx                  (1000.0    )] :Optional  :Image Size[Pixel]
    [-ny                 ny                  (1000.0    )] :Optional  :Image Size[Pixel]
    [-center             center              (500.0     )] :Optional  :Center of nx (center of filament)[Pixel]
    [-layerline          layerline           (21.0      )] :Optional  :Number of Layer Line
    [-Ax                 Ax                  (5000.0    )] :Optional  :Length of nx (lx * nx)[A]
    [-dY                 dY                  (12.0      )] :Optional  :Range of Layer Line[pixel]
    [-truePitch          truePitch           (430       )] :Optional  :True Pitch
    [-PixelSize          PixelSize           (5         )] :Optional  :Pixel Size [A]
    [-deltadY            deltadY             (0.5       )] :Optional  :A range of deltadY to determine dY.[pixel]
    [-m[ode]             mode                (1         )] :Optional  :Mode
----- Additional Usage -----
----- mode -----
    0: for myosin  t=1 u=9
    1: for anything