mrcImageAutoRotationCorrelation3D

Usage

Usage: mrcImageAutoRotationCorrelation3D
Options:
    [-i[nput]            In                  (NULL      )] :Essential :Input: mrc[test]
    [-r[ef]              Ref                 (NULL      )] :Essential :Input: mrc[ref]
    [-o[utput]           Out                 (stdout    )] :Optional  :Output: Parameter
    [-cor                Cor                 (NULL      )] :Optional  :Output: CorMap
    [-fit                Fit                 (stdout    )] :Optional  :Output: Best Fit
    [-E[uler]A[ngle]     EulerAngle          (YOYS      )] :Optional  :Input: EulerAngle
    [-Rot1               Rot1Min             (0.0       )Rot1Max             (360.0     )Rot1Delta           (5.0       )] :Optional  :Rot1
    [-Rot2               Rot2Min             (0.0       )Rot2Max             (180.0     )Rot2Delta           (5.0       )] :Optional  :Rot2
    [-Rot3               Rot3Min             (0.0       )Rot3Max             (360.0     )Rot3Delta           (5.0       )] :Optional  :Rot3
    [-Xrange             XrangeMin           (0         )XrangeMax           (0         )] :Optional  :Xrange[pixel]: Not set, all space search
    [-Yrange             YrangeMin           (0         )YrangeMax           (0         )] :Optional  :Yrange[pixel]: Not set, all space search
    [-Zrange             ZrangeMin           (0         )ZrangeMax           (0         )] :Optional  :Zrange[pixel]: Not set, all space search
    [-M[ode]             Mode                (0         )] :Optional  :Mode: Correlation Mode
    [-M[ode]R[otation]   ModeRotation        (0         )] :Optional  :Mode: Rotation3D Mode
    [-c[onfig]           configFile          (NULL      )] :Optional  :ConfigurationFile
    [-m[ode]             mode                (0         )] :Optional  :Mode: InterpolationMode
----- Additional Usage -----
----- -M  CorrelationMode -----
0: Normal Correlation FxG*
1: Phase  Correlation FxG*/     |FxG*|
2: Phase  Correlation FxG*/sqrt(|FxG*|)
3: Normalized Normal Correlation FxG*/|F||G|)
16: (0,0) = 0 
Refinement Correlation Map
0: sqrt(Sum |Fi-Gi|^2                 / Sum |Gi|^2)
1:      Sum |Gi||phaseFi - phaseGi|   / Sum |Gi|  
2: sqrt(Sum |Gi||phaseFi - phaseGi|^2 / Sum |Gi|  )
----- -MR RotationMode -----
 0: padding 0 
 1: padding average 
 +0:  within ellipsoidal area.
 +16: within square area.