* checking for file 'cghMCR/DESCRIPTION' ... OK
* preparing 'cghMCR':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'cghMCR' ...
** R
** data
** inst
** save image
Loading required package: DNAcopy
Loading required package: marray
Loading required package: limma
Loading required package: arrayQuality
Loading required package: convert
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()' or start with 'help(Biobase)'. For details
on reading vignettes, see the openVignette help page.
Loading required package: hexbin
Loading required package: grid
Loading required package: lattice
Loading required package: colorspace
Creating a new generic function for 'plot' in 'colorspace'
Attaching package: 'colorspace'
The following object(s) are masked from package:grDevices :
hcl
Loading required package: gridBase
Loading required package: RColorBrewer
Creating a new generic function for 'print' in 'cghMCR'
** help
>>> Building/Updating help pages for package 'cghMCR'
Formats: text html latex example
cghMCR-class text html latex example
cghMCR text html latex example
mergeMCRProbes text html latex example
plot.DNAcopy text html latex example
** building package indices ...
* DONE (cghMCR)
* creating vignettes ... ERROR
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()' or start with 'help(Biobase)'. For details
on reading vignettes, see the openVignette help page.
Creating a new generic function for 'plot' in 'colorspace'
/loc/biocbuild/1.9d/R/bin/texi2dvi: pdflatex exited with bad status, quitting.
/loc/biocbuild/1.9d/R/bin/texi2dvi: see findMCR.log for errors.
Error in texi2dvi(file = bft, pdf = TRUE, clean = FALSE, quiet = quiet) :
running texi2dvi on 'findMCR.tex' failed
In addition: Warning message:
array has repeated maploc positions
in: CNA(matrix(as.numeric(log2Ratio), ncol = ncol(log2Ratio), byrow = FALSE),
Execution halted