* checking for file 'gcrma/DESCRIPTION' ... OK
* preparing 'gcrma':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
* Installing *source* package 'gcrma' ...
** libs
gcc -I/home/biocbuild/1.9d/R/include -I/home/biocbuild/1.9d/R/include -I/usr/local/include -fpic -g -O2 -std=gnu99 -Wall -c baseProfile.c -o baseProfile.o
baseProfile.c: In function 'gcrma_getSeq2':
baseProfile.c:14: warning: unused variable 'nx'
gcc -I/home/biocbuild/1.9d/R/include -I/home/biocbuild/1.9d/R/include -I/usr/local/include -fpic -g -O2 -std=gnu99 -Wall -c computeAffinities.c -o computeAffinities.o
gcc -I/home/biocbuild/1.9d/R/include -I/home/biocbuild/1.9d/R/include -I/usr/local/include -fpic -g -O2 -std=gnu99 -Wall -c postmean.c -o postmean.o
gcc -shared -L/usr/local/lib64 -o gcrma.so baseProfile.o computeAffinities.o postmean.o
** R
** data
** inst
** preparing package for lazy loading
Loading required package: affy
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()' or start with 'help(Biobase)'. For details
on reading vignettes, see the openVignette help page.
Loading required package: affyio
Loading required package: matchprobes
** help
>>> Building/Updating help pages for package 'gcrma'
Formats: text html latex example
affinity.spline.coefs text html latex
bg.adjust.affinities text html latex
bg.adjust.gcrma text html latex example
bg.parameters.ns text html latex
compute.affinities text html latex
fast.bkg text html latex
gcrma text html latex example
gcrma.engine text html latex example
gcrma.engine2 text html latex example
getCDF text html latex
justGCRMA text html latex example
** building package indices ...
* DONE (gcrma)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'gcrma_2.5.1.tar.gz'