* checking for file 'rflowcyt/DESCRIPTION' ... OK
* preparing 'rflowcyt':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'rflowcyt' ...
** R
** inst
** preparing package for lazy loading
Loading required package: survival
Loading required package: splines
Loading required package: xtable
Loading required package: KernSmooth
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: MASS
Loading required package: grid
Loading required package: splancs
Loading required package: sp
Spatial Point Pattern Analysis Code in S-Plus
Version 2 - Spatial and Space-Time analysis
Loading required package: hexbin
Loading required package: lattice
Loading required package: colorspace
Attaching package: 'colorspace'
The following object(s) are masked from package:grDevices :
hcl
Loading required package: rfcdmin
Loading required package: fields
fields is loaded use help(fields) for an overview of this library
Loading required package: locfit
Loading required package: akima
locfit 1.5-3 2006-04-06
Creating a new generic function for 'print' in 'rflowcyt'
** help
>>> Building/Updating help pages for package 'rflowcyt'
Formats: text html latex example
ContourScatterPlot text html latex example
FCS-class text html latex example
FCSgate-class text html latex example
FCSggobi-class text html latex example
FCSmetadata-class text html latex example
FCSsummary-class text html latex example
FHCRC.HVTNFCS text html latex example
ImageParCoord text html latex example
KS.flowcytest text html latex example
MODE text html latex example
PercentPos.FCS text html latex example
ProbBin.FCS text html latex example
ProbBin.flowcytest text html latex example
ROC.FCS text html latex example
VRC.HVTNFCS text html latex example
WLR.flowcytest text html latex example
add.parallel.coordinates text html latex example
add.parallelCoordinates text html latex example
addParameter-methods text html latex
boxplot.FCS text html latex example
breakpoints.ProbBin text html latex example
checkvars-methods text html latex
coerce-FCSformat text html latex example
coerce-methods text html latex
convertS3toS4 text html latex example
createGate text html latex example
cytoSet-class text html latex example
dim.FCS-methods text html latex
emp.f text html latex example
equals-methods text html latex
extractGateHistory text html latex example
extractGatedData text html latex example
fcs.type text html latex example
fixvars-methods text html latex
fluors-methods text html latex
gate.IPC text html latex example
get.h text html latex example
get.num.modes text html latex example
get.p text html latex example
ggobi-methods text html latex
legend.CSP text html latex example
make.grid text html latex example
metaData-methods text html latex
pairs.CSP text html latex example
parallel.coordinates text html latex example
parallelCoordinates text html latex example
pkci2.flowcytest text html latex example
plot-methods text html latex
plot.ProbBin.FCS text html latex example
plot2sets.FCS text html latex example
plotECDF.FCS text html latex example
plotQA.FCS text html latex example
plotdensity.FCS text html latex example
plotvar.FCS text html latex example
print-methods text html latex
read.FCS text html latex example
read.series.FCS text html latex example
rect.box.idx text html latex example
rflowcyt-defunct text html latex
runflowcytests text html latex example
show-methods text html latex
showgate.FCS text html latex example
standard text html latex example
subset-methods text html latex
subset2-methods text html latex
subset2assign-methods text html latex
subsetassign-methods text html latex
summary-methods text html latex
summary.ProbBin.FCS text html latex example
xgobi.FCS text html latex example
** building package indices ...
* DONE (rflowcyt)
* creating vignettes ... ERROR
Loading required package: xtable
Loading required package: rflowcyt
Loading required package: survival
Loading required package: splines
Loading required package: KernSmooth
Loading required package: MASS
Loading required package: grid
Loading required package: splancs
Loading required package: sp
Loading required package: hexbin
Loading required package: lattice
Loading required package: colorspace
Attaching package: 'colorspace'
The following object(s) are masked from package:grDevices :
hcl
Loading required package: rfcdmin
Loading required package: fields
Loading required package: locfit
Loading required package: akima
Error: chunk 4 (label=rflowcytLibraryCall)
Error in eval.with.vis(expr, .GlobalEnv, baseenv()) :
rflowcyt not available?
Error in buildVignettes(dir = ".") : Error: chunk 4 (label=rflowcytLibraryCall)
Error in eval.with.vis(expr, .GlobalEnv, baseenv()) :
rflowcyt not available?
Execution halted