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Package 125/205OSArchBUILDCHECKBUILD BIN

mscalib

1.3.0

Witold Wolski
Linux (SUSE 9.2) x86_64 ERROR skipped
Linux (SUSE 9.2) i686[ ERROR ]skipped
Solaris 2.9 sparc ERROR skipped
Linux (SUSE 10.0) x86_64 ERROR skipped
Windows Server 2003 x86_64 ERROR skippedskipped
Windows XP i686 ERROR skippedskipped
Mac OS X (10.4.6) i686 ERROR skipped
Package: mscalib
Version: 1.3.0
Command: /loc/biocbuild/1.9d/R/bin/R CMD build mscalib
RetCode: 1
Time: 14.8 seconds
Status: ERROR
PackageFile: None

Command output

* checking for file 'mscalib/DESCRIPTION' ... OK
* preparing 'mscalib':
* checking DESCRIPTION meta-information ... OK
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
* Installing *source* package 'mscalib' ...
** R
** data
** inst
** help
 >>> Building/Updating help pages for package 'mscalib'
     Formats: text html latex example 
  CSKrig-class                      text    html    latex   example
  CSTps-methods                     text    html    latex   example
  CSsurf-class                      text    html    latex   example
  CSsurf.gls-methods                text    html    latex   example
  CSsurf.ls-methods                 text    html    latex
  CalibPRstat-class                 text    html    latex   example
  Calibextstat-class                text    html    latex   example
  Calibintlist-class                text    html    latex   example
  Calibintstat-class                text    html    latex   example
  Caliblist-class                   text    html    latex   example
  Calibprelist-class                text    html    latex   example
  Calibprestat-class                text    html    latex   example
  Calibstat-class                   text    html    latex   example
  Cpf                               text    html    latex   example
  DATA                              text    html    latex   example
  DATA2                             text    html    latex   example
  DgetPRcalib                       text    html    latex
  Fcn                               text    html    latex   example
  Fmn                               text    html    latex   example
  Surf-class                        text    html    latex   example
  averageAAmass                     text    html    latex   example
  c0lambdaDBn                       text    html    latex   example
  c0lambdaDBnC                      text    html    latex   example
  correctinternal-methods           text    html    latex   example
  diffFilter-methods                text    html    latex   example
  distance3                         text    html    latex   example
  distance4                         text    html    latex   example
  frlist                            text    html    latex   example
  getLpepcalib-methods              text    html    latex   example
  getPPGmasses                      text    html    latex   example
  getPRcalib-methods                text    html    latex
  getdiff-methods                   text    html    latex   example
  getextcalib-methods               text    html    latex
  getglobalcalib-methods            text    html    latex
  getintcalib-methods               text    html    latex   example
  getmstCalib-methods               text    html    latex   example
  getpepcalib-methods               text    html    latex   example
  getprecalib-methods               text    html    latex
  globalcalib-methods               text    html    latex
  lambda.cleavagesite               text    html    latex   example
  lambda.none                       text    html    latex   example
  massFilter-methods                text    html    latex
  monoiso                           text    html    latex   example
  mstCalib-class                    text    html    latex   example
  nomina                            text    html    latex   example
  pepFilter-methods                 text    html    latex
  peproleFilter-methods             text    html    latex
  peprule                           text    html    latex   example
  pepruleFilter                     text    html    latex
  peprulecomp                       text    html    latex   example
  prAA                              text    html    latex   example
  residuals-methods                 text    html    latex
  restrictionenz                    text    html    latex   example
  undocument-internal               text    html    latex
  wsFilter-methods                  text    html    latex
** building package indices ...
* DONE (mscalib)
* creating vignettes ... ERROR
Loading required package: MASS

Loading required package: XML

Loading required package: fields

Loading required package: spatial


Error:  chunk 6 (label=CALIBRATEABMASSES) 
Error in .local(obx, oby, ...) : SET_STRING_ELT() can only be applied to a 'character vector', not a 'list'
Error in buildVignettes(dir = ".") : Error:  chunk 6 (label=CALIBRATEABMASSES) 
Error in .local(obx, oby, ...) : SET_STRING_ELT() can only be applied to a 'character vector', not a 'list'
Execution halted