RMAPPER 1.14.0
Heike Sichtig , Alberto Riva
| Snapshot Date: 2014-09-19 17:20:34 -0700 (Fri, 19 Sep 2014) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/RMAPPER | | Last Changed Rev: 88838 / Revision: 94317 | | Last Changed Date: 2014-04-11 14:07:21 -0700 (Fri, 11 Apr 2014) |
| zin2 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | NotNeeded | ERROR | skipped | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ ERROR ] | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | ERROR | skipped | skipped |
| morelia | Mac OS X Mavericks (10.9.4) / x86_64 | NotNeeded | ERROR | skipped | skipped |
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### Running command:
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### rm -rf RMAPPER.buildbin-libdir && mkdir RMAPPER.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RMAPPER.buildbin-libdir RMAPPER_1.14.0.tar.gz >RMAPPER-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=RMAPPER.buildbin-libdir --install="check:RMAPPER-install.out" --force-multiarch --no-vignettes --timings RMAPPER_1.14.0.tar.gz
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* using log directory 'E:/biocbld/bbs-2.14-bioc/meat/RMAPPER.Rcheck'
* using R version 3.1.1 (2014-07-10)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RMAPPER/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RMAPPER' version '1.14.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RMAPPER' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Non-standard license specification:
Artistic 2.0
Standardizable: TRUE
Standardized license specification:
Artistic-2.0
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'methods'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
readMAPPER: warning in read.delim(tc, sep = "\t", skip = 1, h = TRUE):
partial argument match of 'h' to 'header'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... ERROR
Running examples in 'RMAPPER-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: readMAPPER
> ### Title: Retrieve a set of predicted transcription factor binding sites
> ### from the MAPPER database
> ### Aliases: readMAPPER
> ### Keywords: models
>
> ### ** Examples
>
> # Run an example retrieving data from the MAPPER RPC interface for gene ID = NM_009696
> mh = readMAPPER(gene="NM_009696", perc="95", models="M00027")
Error in readMAPPER(gene = "NM_009696", perc = "95", models = "M00027") :
no hits returned
Execution halted
** running examples for arch 'x64' ... ERROR
Running examples in 'RMAPPER-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: readMAPPER
> ### Title: Retrieve a set of predicted transcription factor binding sites
> ### from the MAPPER database
> ### Aliases: readMAPPER
> ### Keywords: models
>
> ### ** Examples
>
> # Run an example retrieving data from the MAPPER RPC interface for gene ID = NM_009696
> mh = readMAPPER(gene="NM_009696", perc="95", models="M00027")
Error in readMAPPER(gene = "NM_009696", perc = "95", models = "M00027") :
no hits returned
Execution halted
install for i386
* installing *source* package 'RMAPPER' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'RMAPPER' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RMAPPER' as RMAPPER_1.14.0.zip
* DONE (RMAPPER)