flowQ 1.23.2
Mike Jiang
| Snapshot Date: 2014-03-10 17:01:58 -0700 (Mon, 10 Mar 2014) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/flowQ | | Last Changed Rev: 85452 / Revision: 87287 | | Last Changed Date: 2014-01-11 17:21:15 -0800 (Sat, 11 Jan 2014) |
| zin2 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | OK | WARNINGS | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | [ ERROR ] | skipped | skipped |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | WARNINGS | OK |
* checking for file 'flowQ/DESCRIPTION' ... OK
* preparing 'flowQ':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ...Warning: running command '"E:/biocbld/bbs-2.14-bioc/R/bin/i386/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
ERROR
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following object is masked from 'package:stats':
xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, as.vector, cbind, colnames, do.call, duplicated,
eval, evalq, get, intersect, is.unsorted, lapply, mapply, match,
mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
rep.int, rownames, sapply, setdiff, sort, table, tapply, union,
unique, unlist
Loading required package: outliers
Loading required package: lattice
Loading required package: flowViz
Loading required package: flowCore
Attaching package: 'flowCore'
The following object is masked from 'package:BiocGenerics':
normalize
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
Loading required package: mvoutlier
Loading required package: sgeostat
Loading required package: bioDist
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: KernSmooth
Loading required package: parody
Loading required package: tools
Loading required package: RColorBrewer
Loading required package: latticeExtra
Attaching package: 'latticeExtra'
The following object is masked from 'package:flowViz':
ecdfplot
Warning: replacing previous import by 'flowCore::normalize' when loading 'flowQ'
Warning: replacing previous import by 'flowCore::sort' when loading 'flowQ'
Warning: replacing previous import by 'methods::as' when loading 'flowQ'
Using ImageMagic library at NA
(version NA)
Invalid Parameter - 350x350
Warning: running command 'convert -resize 350x350 "E:/biocbld/bbs-2.14-bioc/tmpdir/RtmpEt4Rps/flowQ/images/vnC0oN7puc/summary.pdf" "E:/biocbld/bbs-2.14-bioc/tmpdir/RtmpEt4Rps/flowQ/images/vnC0oN7puc/bbs-2.jpg"' had status 4
Error: processing vignette 'DataQualityAssessment.Rnw' failed with diagnostics:
chunk 1 (label = cellnum)
Error in validProcess(.Object) :
No image files available. Check file paths
Execution halted