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Package 124/294HostnameOS / ArchBUILDCHECKBUILD BIN
GraphAlignment 1.4.0
Joern P. Meier
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/GraphAlignment
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64 [ OK ] OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: GraphAlignment
Version: 1.4.0
Command: /home/biocbuild/bbs-2.3-bioc/R/bin/R CMD build GraphAlignment
StartedAt: 2009-04-18 14:18:33 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 14:18:39 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 5.5 seconds
RetCode: 0
Status: OK
PackageFile: GraphAlignment_1.4.0.tar.gz
PackageFileSize: 324 KiB

Command output

* checking for file 'GraphAlignment/DESCRIPTION' ... OK
* preparing 'GraphAlignment':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'GraphAlignment' ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c GA_alloc.c -o GA_alloc.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c GA_matrix.c -o GA_matrix.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c GA_matrix_R.c -o GA_matrix_R.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c GA_message.c -o GA_message.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c GA_vector.c -o GA_vector.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c GA_vector_R.c -o GA_vector_R.o
GA_vector_R.c: In function ‘GA_clamp_mode_from_R’:
GA_vector_R.c:139: warning: unused variable ‘size’
gcc -std=gnu99 -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c GraphAlignment.c -o GraphAlignment.o
GraphAlignment.c: In function ‘GA_encode_directed_graph’:
GraphAlignment.c:138: warning: suggest explicit braces to avoid ambiguous ‘else’
GraphAlignment.c:159: warning: suggest explicit braces to avoid ambiguous ‘else’
GraphAlignment.c: In function ‘GA_directed_mode_from_R’:
GraphAlignment.c:264: warning: unused variable ‘size’
gcc -std=gnu99 -I/home/biocbuild/bbs-2.3-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c lap.c -o lap.o
lap.c: In function ‘LAP_lap’:
lap.c:65: warning: ‘min’ may be used uninitialized in this function
lap.c:64: warning: ‘last’ may be used uninitialized in this function
gcc -std=gnu99 -shared -L/usr/local/lib64 -o GraphAlignment.so GA_alloc.o GA_matrix.o GA_matrix_R.o GA_message.o GA_vector.o GA_vector_R.o GraphAlignment.o lap.o   -L/home/biocbuild/bbs-2.3-bioc/R/lib -lR
** R
** inst
** preparing package for lazy loading
** help
 >>> Building/Updating help pages for package 'GraphAlignment'
     Formats: text html latex example 
  AlignNetworks                     text    html    latex   example
  AlignedPairs                      text    html    latex   example
  AnalyzeAlignment                  text    html    latex   example
  ComputeLinkParameters             text    html    latex   example
  ComputeM                          text    html    latex   example
  ComputeNodeParameters             text    html    latex   example
  ComputeScores                     text    html    latex   example
  CreateScoreMatrix                 text    html    latex   example
  EncodeDirectedGraph               text    html    latex   example
  GenerateExample                   text    html    latex   example
  GetBinNumber                      text    html    latex   example
  InitialAlignment                  text    html    latex   example
  InvertPermutation                 text    html    latex   example
  LinearAssignment                  text    html    latex   example
  MatrixToBin                       text    html    latex   example
  Permute                           text    html    latex   example
  Trace                             text    html    latex   example
  VectorToBin                       text    html    latex   example
** building package indices ...
* DONE (GraphAlignment)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'GraphAlignment_1.4.0.tar.gz'