DAVIDQuery 1.4.0
Roger Day
| Snapshot Date: 2010-04-02 23:28:25 -0700 (Fri, 02 Apr 2010) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_5/madman/Rpacks/DAVIDQuery | | Last Changed Rev: 42684 / Revision: 45705 | | Last Changed Date: 2009-10-27 16:33:29 -0700 (Tue, 27 Oct 2009) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | [ ERROR ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | ERROR | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | ERROR | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | ERROR | OK |
* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.5-bioc/meat/DAVIDQuery.Rcheck'
* using R version 2.10.1 (2009-12-14)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'DAVIDQuery/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'DAVIDQuery' version '1.4.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'DAVIDQuery' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking examples ... ERROR
Running examples in 'DAVIDQuery-Ex.R' failed.
The error most likely occurred in:
> ### * DAVIDQuery
>
> flush(stderr()); flush(stdout())
>
> ### Name: DAVIDQuery
> ### Title: DAVIDQuery
> ### Aliases: DAVIDQuery
> ### Keywords: database
>
> ### ** Examples
>
> result = DAVIDQuery(testMe=TRUE)$DAVIDQueryResult
Warning in doTryCatch(return(expr), name, parentenv, handler) :
Warning: downloadFileName is not found in reply html.
Warning in file(file, "rt") :
cannot open: HTTP status was '404 //UserDownload/'
Error in file(file, "rt") : cannot open the connection
> print(length(result))
[1] 1
> print(result$firstURL)
Error in result$firstURL : $ operator is invalid for atomic vectors
Calls: print
Execution halted