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Package 40/82HostnameOS / ArchBUILDCHECKBUILD BIN
harbChIP 1.0.5
VJ Carey
Snapshot Date: 2011-02-27 12:29:13 -0800 (Sun, 27 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/harbChIP
Last Changed Rev: 1209 / Revision: 1436
Last Changed Date: 2010-04-11 09:43:18 -0700 (Sun, 11 Apr 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: harbChIP
Version: 1.0.5
Command: /Library/Frameworks/R.framework/Versions/2.12/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch harbChIP_1.0.5.tar.gz
StartedAt: 2011-02-27 14:50:42 -0800 (Sun, 27 Feb 2011)
EndedAt: 2011-02-27 14:53:07 -0800 (Sun, 27 Feb 2011)
EllapsedTime: 144.4 seconds
RetCode: 0
Status:  OK 
CheckDir: harbChIP.Rcheck
Warnings: 0

Command output

* using log directory ‘/Users/biocbuild/bbs-2.7-data-experiment/meat/harbChIP.Rcheck’
* using R version 2.12.2 Patched (2011-02-25 r54591)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘harbChIP/DESCRIPTION’ ... OK
* this is package ‘harbChIP’ version ‘1.0.5’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘harbChIP’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
chkAllUS: no visible binding for global variable ‘sceUpstr’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

harbChIP.Rcheck/00install.out:

* installing *source* package ‘harbChIP’ ...
** R
** data
** inst
** preparing package for lazy loading

Attaching package: 'IRanges'

The following object(s) are masked from 'package:base':

    Map, cbind, eval, mapply, order, paste, pmax, pmax.int, pmin,
    pmin.int, rbind, rep.int, table


Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.


Attaching package: 'Biobase'

The following object(s) are masked from 'package:IRanges':

    updateObject

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (harbChIP)

harbChIP.Rcheck/harbChIP-Ex.timings:

nameusersystemelapsed
allhex1.0430.0381.098
buildUpstreamSeqs2000
chkMotif4TF000
harbChIP4.2060.1804.412
sceUpstream0.6780.0220.701
upstreamSeqs-class0.5600.0240.599