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Package 22/444HostnameOS / ArchBUILDCHECKBUILD BIN
AgiMicroRna 2.0.2
Pedro Lopez-Romero
Snapshot Date: 2011-03-17 11:16:30 -0700 (Thu, 17 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/AgiMicroRna
Last Changed Rev: 51210 / Revision: 53825
Last Changed Date: 2010-12-03 13:03:37 -0800 (Fri, 03 Dec 2010)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.6) / i386  OK [ OK ] OK 

Summary

Package: AgiMicroRna
Version: 2.0.2
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch AgiMicroRna_2.0.2.tar.gz
StartedAt: 2011-03-17 15:28:03 -0700 (Thu, 17 Mar 2011)
EndedAt: 2011-03-17 15:33:00 -0700 (Thu, 17 Mar 2011)
EllapsedTime: 296.8 seconds
RetCode: 0
Status:  OK 
CheckDir: AgiMicroRna.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/AgiMicroRna.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-03-06 r54683)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'AgiMicroRna/DESCRIPTION' ... OK
* this is package 'AgiMicroRna' version '2.0.2'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'AgiMicroRna' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  6.2Mb
  sub-directories of 1Mb or more:
    data   1.8Mb
    doc    4.2Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

AgiMicroRna.Rcheck/00install.out:

* installing *source* package 'AgiMicroRna' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: KEGG.db
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (AgiMicroRna)

AgiMicroRna.Rcheck/AgiMicroRna-Ex.timings:

nameusersystemelapsed
HeatMapMicroRna1.0330.0461.087
PCAplotMicroRna0.2180.0040.222
RleMicroRna2.5880.0242.612
basicLimma0.0010.0000.000
boxplotMicroRna0.4840.0070.492
cvArray000
filterMicroRna2.1410.0802.221
getDecideTests000
hierclusMicroRna0.0110.0010.012
mvaBASIC1.9630.0211.984
mvaMicroRna17.319 0.09017.455
plotDensityMicroRna0.3900.0070.397
pvalHistogram000
qcPlots000
readMicroRnaAFE000
rmaMicroRna55.876 7.17963.057
significantMicroRna0.9220.0370.959
tgsMicroRna0.4820.0650.548
tgsNormalization0.0010.0000.001
uRNAList000
writeEset0.0000.0000.001