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Package 203/467HostnameOS / ArchBUILDCHECKBUILD BIN
GOSemSim 1.10.2
Guangchuang Yu
Snapshot Date: 2011-10-14 07:21:38 -0700 (Fri, 14 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/GOSemSim
Last Changed Rev: 56606 / Revision: 59225
Last Changed Date: 2011-07-06 23:08:26 -0700 (Wed, 06 Jul 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: GOSemSim
Version: 1.10.2
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch GOSemSim_1.10.2.tar.gz
StartedAt: 2011-10-14 15:25:17 -0700 (Fri, 14 Oct 2011)
EndedAt: 2011-10-14 15:29:10 -0700 (Fri, 14 Oct 2011)
EllapsedTime: 233.2 seconds
RetCode: 0
Status:  OK 
CheckDir: GOSemSim.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/GOSemSim.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'GOSemSim/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'GOSemSim' version '1.10.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GOSemSim' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under inst/doc ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

GOSemSim.Rcheck/00install.out:

* installing *source* package 'GOSemSim' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: DBI




















** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (GOSemSim)

GOSemSim.Rcheck/GOSemSim-Ex.timings:

nameusersystemelapsed
GOSet-class0.5430.0540.654
GOSet-methods0.0010.0000.001
GeneClusterSet-class23.861 0.61624.939
GeneSet-class13.310 0.30613.704
Params-class0.0020.0000.002
Params-methods0.0420.0050.046
clusterSim13.389 0.32413.778
geneSim11.845 0.19112.126
goSim0.2770.0140.292
mclusterSim14.032 0.29514.425
mgeneSim11.903 0.20012.151
mgoSim0.2750.0180.294