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Package 174/444HostnameOS / ArchBUILDCHECKBUILD BIN
GenomeGraphs 1.11.0
Steffen Durinck
Snapshot Date: 2011-03-13 11:16:29 -0700 (Sun, 13 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GenomeGraphs
Last Changed Rev: 50295 / Revision: 53663
Last Changed Date: 2010-10-17 22:57:44 -0700 (Sun, 17 Oct 2010)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.6) / i386  OK [ OK ] OK 

Summary

Package: GenomeGraphs
Version: 1.11.0
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch GenomeGraphs_1.11.0.tar.gz
StartedAt: 2011-03-13 16:16:31 -0700 (Sun, 13 Mar 2011)
EndedAt: 2011-03-13 16:20:36 -0700 (Sun, 13 Mar 2011)
EllapsedTime: 244.6 seconds
RetCode: 0
Status:  OK 
CheckDir: GenomeGraphs.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/GenomeGraphs.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-03-06 r54683)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'GenomeGraphs/DESCRIPTION' ... OK
* this is package 'GenomeGraphs' version '1.11.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GenomeGraphs' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

GenomeGraphs.Rcheck/00install.out:

* installing *source* package 'GenomeGraphs' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (GenomeGraphs)

GenomeGraphs.Rcheck/GenomeGraphs-Ex.timings:

nameusersystemelapsed
AnnotationTrack-class0.0020.0000.001
BaseTrack-class000
DisplayPars-class0.0010.0000.001
DisplayPars0.3720.0123.979
ExonArray-class0.0020.0000.003
Gene-class000
GeneModel-class0.1510.0030.154
GeneRegion-class000
GenericArray-class0.0010.0000.001
GenomeAxis-class0.0010.0010.000
HighlightRegion-class0.0000.0000.002
Ideogram-class0.0010.0000.000
ImplementsTrackOverlay-class0.0010.0000.001
Legend-class0.0000.0000.001
MappedRead-class0.0000.0010.000
Overlay-class0.0010.0000.001
RectangleOverlay-class0.0010.0000.001
Segmentation-class0.0010.0000.001
Smoothing-class0.0010.0000.001
TextOverlay-class0.0010.0000.001
Title-class0.0010.0000.001
TrackOverlay-class0.0000.0010.001
Transcript-class000
TranscriptRegion-class0.0010.0000.001
cn000
exonProbePos000
gdObject-class0.0020.0010.002
gdPlot 1.826 0.021198.752
getPar0.0020.0000.002
ideogramTab0.0020.0010.002
intensity0.0000.0000.001
makeAnnotationTrack0.0290.0000.028
makeBaseTrack0.0010.0010.002
makeExonArray0.0010.0000.001
makeGene0.0010.0000.001
makeGeneModel0.0010.0000.000
makeGeneRegion0.0010.0010.001
makeGenericArray0.0010.0000.001
makeGenomeAxis0.0010.0000.001
makeIdeogram0.0010.0000.001
makeLegend0.0000.0000.001
makeRectangleOverlay0.0960.0010.098
makeSegmentation0.0810.0010.082
makeSmoothing0.1040.0010.105
makeTextOverlay0.0880.0010.090
makeTitle0.0010.0000.001
makeTranscript0.0000.0000.001
probestart000
segEnd000
segStart000
segments0.0000.0000.001
seqDataEx0.0320.0000.033
setPar0.0160.0000.016
showDisplayOptions0.0010.0000.001
unrData000
unrNProbes000
unrPositions000
yeastCons1000