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Package 246/467HostnameOS / ArchBUILDCHECKBUILD BIN
KEGGSOAP 1.26.1
Biocore Team c/o BioC user list
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/KEGGSOAP
Last Changed Rev: 57764 / Revision: 59457
Last Changed Date: 2011-08-31 13:37:49 -0700 (Wed, 31 Aug 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: KEGGSOAP
Version: 1.26.1
Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings KEGGSOAP_1.26.1.tar.gz
StartedAt: 2011-10-20 13:15:34 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 13:17:10 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 96.0 seconds
RetCode: 0
Status:  OK 
CheckDir: KEGGSOAP.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/KEGGSOAP.Rcheck’
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘KEGGSOAP/DESCRIPTION’ ... OK
* this is package ‘KEGGSOAP’ version ‘1.26.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘KEGGSOAP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

KEGGSOAP.Rcheck/00install.out:

* installing *source* package ‘KEGGSOAP’ ...
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (KEGGSOAP)

KEGGSOAP.Rcheck/KEGGSOAP-Ex.timings:

nameusersystemelapsed
bconv0.1040.0043.310
bget0.0360.0002.586
get.genes.by.motifs0.0400.0042.461
get.genes.by.organism0.0160.0080.742
get.genes.by.pathway0.0840.0003.016
get.ko.by.gene0.1320.0005.095
get.motifs.by.gene0.0320.0001.329
get.paralogs.by.gene0.0560.0001.625
get.pathways.by.genes0.0760.0003.962
getBestNeighbors0.0760.0003.470
list.organisms2.2680.0128.416
mark.pathway.by.objects0.0400.0006.711
search.compounds.by.name0.1400.0046.823
search.glycans.by.name0.1600.0007.714